Wall clock time and date at job start Mon Mar 30 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86794 * 120.00033 * 2 1 4 4 H 1.48503 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47225 * 300.00033 * 3 2 1 6 6 H 1.48501 * 109.47193 * 59.99978 * 3 2 1 7 7 C 1.40042 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99448 * 180.02562 * 7 2 1 9 9 C 1.41414 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.40494 * 119.77682 * 180.02562 * 9 7 2 11 11 C 1.39341 * 118.83085 * 180.02562 * 10 9 7 12 12 C 1.48314 * 120.82880 * 180.26862 * 11 10 9 13 13 C 1.39751 * 120.44210 * 179.71561 * 12 11 10 14 14 C 1.38310 * 118.38692 * 180.02562 * 13 12 11 15 15 C 1.39463 * 119.18081 * 0.02562 * 14 13 12 16 16 C 1.47976 * 119.59930 * 180.02562 * 15 14 13 17 17 O 1.21443 * 119.99863 * 359.97438 * 16 15 14 18 18 O 1.34692 * 120.00250 * 180.02562 * 16 15 14 19 19 N 1.32813 * 120.80814 * 359.96672 * 15 14 13 20 20 C 1.31338 * 121.76459 * 359.75596 * 19 15 14 21 21 C 1.40085 * 118.34551 * 359.97438 * 11 10 9 22 22 C 1.38520 * 119.41423 * 359.97438 * 21 11 10 23 23 N 1.31458 * 121.15340 * 0.02562 * 22 21 11 24 24 H 0.97003 * 119.99660 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.58215 * 359.97438 * 10 9 7 26 26 H 1.07999 * 120.80447 * 359.97438 * 13 12 11 27 27 H 1.07998 * 120.41449 * 179.97438 * 14 13 12 28 28 H 0.96707 * 117.00281 * 179.97438 * 18 16 15 29 29 H 1.07997 * 119.63120 * 180.26145 * 20 19 15 30 30 H 1.08006 * 120.29025 * 180.02562 * 21 11 10 31 31 H 1.08001 * 119.41674 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3964 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0876 -1.2128 -0.0001 9 6 1.3004 -2.4375 -0.0005 10 6 2.0076 -3.6515 -0.0005 11 6 1.2911 -4.8466 -0.0011 12 6 1.9925 -6.1533 0.0049 13 6 1.2658 -7.3470 0.0102 14 6 1.9632 -8.5414 0.0162 15 6 3.3575 -8.5147 0.0172 16 6 4.1130 -9.7871 0.0230 17 8 3.5186 -10.8461 0.0274 18 8 5.4598 -9.7707 0.0246 19 7 4.0158 -7.3611 0.0119 20 6 3.3886 -6.2072 0.0007 21 6 -0.1083 -4.7830 -0.0011 22 6 -0.7332 -3.5467 0.0000 23 7 -0.0359 -2.4323 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 3.0876 -3.6583 -0.0010 26 1 0.1858 -7.3370 0.0106 27 1 1.4345 -9.4832 0.0209 28 1 5.9093 -10.6269 0.0288 29 1 3.9584 -5.2898 -0.0077 30 1 -0.6948 -5.6899 -0.0011 31 1 -1.8121 -3.4977 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242338150.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:05 Heat of formation + Delta-G solvation = -41.852431 kcal Electronic energy + Delta-G solvation = -18676.958951 eV Core-core repulsion = 15501.345755 eV Total energy + Delta-G solvation = -3175.613196 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.079 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86275 -40.70697 -39.72807 -37.20080 -35.75677 -34.57007 -33.32566 -31.89704 -30.90617 -27.77634 -26.49252 -25.05512 -23.51011 -22.86315 -22.14599 -19.49252 -19.30098 -18.72537 -17.75842 -17.14145 -16.88108 -16.65805 -16.39424 -15.78938 -15.38408 -15.04109 -14.99751 -14.46994 -14.33045 -14.10402 -14.03543 -13.23956 -12.90163 -12.85240 -12.64449 -12.58510 -12.22990 -12.03393 -11.68421 -11.64864 -11.11953 -10.75110 -10.71593 -9.62165 -9.52598 -9.40384 -8.30820 -6.53127 -0.85255 0.11771 0.87874 0.88615 1.43049 1.48478 1.57716 1.62142 1.84182 2.23387 2.69004 2.90868 3.14068 3.58911 3.79973 3.81452 3.93340 3.95828 4.19707 4.24437 4.55663 4.67085 4.83611 4.84030 4.90825 5.08397 5.23082 5.37384 5.40379 5.45057 5.60143 5.78515 6.07118 6.26880 6.54684 6.70663 6.92628 6.95730 8.17230 8.44039 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035543 B = 0.003816 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.597446 B = 7335.933249 C = 8113.669773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.222 3.778 10 C -0.262 4.262 11 C -0.007 4.007 12 C -0.046 4.046 13 C -0.073 4.073 14 C -0.091 4.091 15 C 0.051 3.949 16 C 0.554 3.446 17 O -0.528 6.528 18 O -0.492 6.492 19 N -0.445 5.445 20 C 0.096 3.904 21 C -0.289 4.289 22 C 0.105 3.895 23 N -0.519 5.519 24 H 0.279 0.721 25 H 0.119 0.881 26 H 0.172 0.828 27 H 0.173 0.827 28 H 0.434 0.566 29 H 0.172 0.828 30 H 0.138 0.862 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.501 -12.027 0.015 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.197 4.197 3 Si 0.805 3.195 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.497 4.497 8 H 0.110 0.890 9 C 0.098 3.902 10 C -0.285 4.285 11 C -0.014 4.014 12 C -0.048 4.048 13 C -0.098 4.098 14 C -0.111 4.111 15 C -0.085 4.085 16 C 0.397 3.603 17 O -0.418 6.418 18 O -0.305 6.305 19 N -0.156 5.156 20 C -0.065 4.065 21 C -0.311 4.311 22 C -0.058 4.058 23 N -0.233 5.233 24 H 0.090 0.910 25 H 0.137 0.863 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.296 0.704 29 H 0.189 0.811 30 H 0.156 0.844 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.499 -11.069 0.020 11.948 hybrid contribution -0.015 -0.420 0.001 0.420 sum 4.483 -11.488 0.021 12.332 Atomic orbital electron populations 1.70223 1.08873 1.29103 1.29506 1.26968 0.95701 1.04530 0.92516 0.85111 0.79523 0.76105 0.78715 1.17615 1.19238 1.19233 1.20068 0.94959 0.90360 1.44346 0.88996 1.18969 0.88784 0.93098 0.89396 1.22065 0.99581 0.92558 1.14284 1.18678 0.93624 0.90652 0.98398 1.20268 0.94679 0.93765 0.96085 1.21977 1.02481 0.89794 0.95527 1.22200 0.92556 1.00705 0.95635 1.20278 0.91449 0.90680 1.06051 1.20296 0.81268 0.87388 0.71305 1.90884 1.71020 1.32250 1.47641 1.84665 1.19111 1.42494 1.84207 1.67610 1.40836 0.97895 1.09274 1.23121 0.91495 0.95801 0.96039 1.21736 0.93476 0.98876 1.17058 1.22954 1.00060 0.88803 0.94020 1.68641 1.07910 1.28945 1.17785 0.91022 0.86281 0.81027 0.80955 0.70425 0.81093 0.84402 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.76 11.46 21.84 0.25 -39.51 16 2 C 0.02 1.22 5.50 85.29 0.47 1.69 16 3 Si 0.99 37.01 29.56 68.60 2.03 39.03 16 4 H -0.25 -9.09 7.11 99.48 0.71 -8.39 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.47 -24.34 9.14 23.49 0.21 -24.13 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.22 11.74 6.55 40.20 0.26 12.00 16 10 C -0.26 -11.88 9.24 23.09 0.21 -11.67 16 11 C -0.01 -0.26 5.91 -19.88 -0.12 -0.38 16 12 C -0.05 -1.48 5.90 -19.87 -0.12 -1.59 16 13 C -0.07 -1.87 9.55 22.65 0.22 -1.65 16 14 C -0.09 -2.18 9.62 22.58 0.22 -1.96 16 15 C 0.05 1.41 6.75 41.87 0.28 1.69 16 16 C 0.55 13.67 8.32 70.40 0.59 14.26 16 17 O -0.53 -14.16 17.10 20.02 0.34 -13.82 16 18 O -0.49 -9.68 13.24 -56.01 -0.74 -10.42 16 19 N -0.45 -13.68 10.10 -184.12 -1.86 -15.54 16 20 C 0.10 3.04 10.61 85.12 0.90 3.94 16 21 C -0.29 -11.17 9.53 22.79 0.22 -10.96 16 22 C 0.11 4.73 11.17 84.82 0.95 5.67 16 23 N -0.52 -27.78 7.84 -189.37 -1.49 -29.27 16 24 H 0.28 13.25 8.29 -92.71 -0.77 12.48 16 25 H 0.12 4.88 6.35 -2.91 -0.02 4.86 16 26 H 0.17 3.55 6.39 -2.91 -0.02 3.53 16 27 H 0.17 3.27 7.63 -2.91 -0.02 3.25 16 28 H 0.43 3.54 9.11 -74.05 -0.67 2.86 16 29 H 0.17 5.19 6.30 -2.91 -0.02 5.17 16 30 H 0.14 4.16 6.38 -2.91 -0.02 4.14 16 31 H 0.14 5.53 8.06 -2.91 -0.02 5.51 16 Total: -1.00 -66.19 284.74 3.36 -62.82 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.53 Total: 19.79 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.29 Total: -13.08 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.09 Total: -84.32 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.40 Total: -24.24 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.03 kcal Total: -66.19 3.36 -62.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242338150.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.970 kcal (2) G-P(sol) polarization free energy of solvation -66.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds