Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47120 * 269.99873 * 3 2 1 5 5 H 1.48498 * 109.47021 * 30.00021 * 3 2 1 6 6 H 1.48501 * 109.46990 * 150.00106 * 3 2 1 7 7 C 1.37881 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.94573 * 270.25749 * 10 9 7 12 12 C 1.38298 * 120.24553 * 180.25612 * 11 10 9 13 13 C 1.38038 * 120.12116 * 359.76878 * 12 11 10 14 14 C 1.39317 * 119.87608 * 359.97201 * 13 12 11 15 15 C 1.48395 * 120.11945 * 179.97438 * 14 13 12 16 16 C 1.39413 * 120.08346 * 179.75316 * 15 14 13 17 17 C 1.38062 * 120.03908 * 179.71881 * 16 15 14 18 18 C 1.38188 * 120.20706 * 0.55696 * 17 16 15 19 19 C 1.39021 * 120.16290 * 359.71540 * 18 17 16 20 20 S 1.76197 * 120.02291 * 179.97438 * 19 18 17 21 21 C 1.38798 * 119.96035 * 0.02562 * 19 18 17 22 22 C 1.37999 * 119.93478 * 89.99846 * 10 9 7 23 23 H 0.97000 * 119.99867 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46819 * 59.99774 * 9 7 2 25 25 H 1.08998 * 109.47295 * 299.99901 * 9 7 2 26 26 H 1.08001 * 119.87394 * 0.02562 * 11 10 9 27 27 H 1.08003 * 119.93961 * 179.74810 * 12 11 10 28 28 H 1.07995 * 120.06251 * 179.97438 * 13 12 11 29 29 H 1.08003 * 119.97627 * 0.02562 * 16 15 14 30 30 H 1.08005 * 119.89516 * 180.25148 * 17 16 15 31 31 H 1.08001 * 119.91729 * 179.69799 * 18 17 16 32 32 H 1.34503 * 103.00443 * 270.02659 * 20 19 18 33 33 H 1.07992 * 120.10460 * 179.97438 * 21 19 18 34 34 H 1.08002 * 120.06557 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.2395 -3.2674 1.1978 12 6 4.7055 -4.5695 1.2051 13 6 4.9436 -5.2268 0.0149 14 6 4.7131 -4.5762 -1.1953 15 6 4.9677 -5.2775 -2.4781 16 6 4.7319 -4.6276 -3.6886 17 6 4.9746 -5.2789 -4.8815 18 6 5.4408 -6.5797 -4.8811 19 6 5.6736 -7.2379 -3.6789 20 16 6.2674 -8.8968 -3.6826 21 6 5.4370 -6.5878 -2.4756 22 6 4.2430 -3.2643 -1.1968 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6800 -0.8911 26 1 4.0545 -2.7568 2.1313 27 1 4.8838 -5.0729 2.1439 28 1 5.3079 -6.2434 0.0217 29 1 4.3637 -3.6122 -3.6932 30 1 4.7949 -4.7717 -5.8180 31 1 5.6245 -7.0864 -5.8170 32 1 5.1355 -9.6234 -3.6867 33 1 5.6166 -7.0970 -1.5404 34 1 4.0630 -2.7553 -2.1322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242863551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = 42.400332 kcal Electronic energy + Delta-G solvation = -16829.195338 eV Core-core repulsion = 14203.528830 eV Total energy + Delta-G solvation = -2625.666508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73314 -38.14842 -33.74941 -32.47443 -31.62671 -30.97893 -28.87097 -27.55674 -23.65075 -23.53250 -22.35437 -21.15246 -19.85972 -18.04397 -17.05386 -16.82803 -15.65893 -15.60145 -15.41783 -14.38459 -14.19526 -13.98592 -13.88501 -13.29144 -13.18272 -12.92233 -12.42786 -12.08440 -11.96376 -11.65907 -11.48285 -11.19961 -10.84484 -10.74495 -10.40505 -10.14868 -9.97277 -9.52463 -9.38027 -9.04197 -8.63774 -8.39470 -8.11471 -7.72856 -6.12652 -4.12451 0.70032 0.98433 1.52164 1.94672 2.11808 2.64299 3.24373 3.32768 3.35003 3.64706 4.36488 4.41998 4.63696 4.72754 4.97336 5.16617 5.19922 5.28050 5.30351 5.40393 5.57173 5.72676 5.81935 5.95113 6.01217 6.10250 6.26470 6.38365 6.40317 6.54671 6.73184 6.84425 6.94156 6.95355 7.01463 7.48049 7.48821 7.64413 8.43504 8.92350 9.47231 11.00196 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003977 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.031315 B = 7038.598788 C = 7637.185026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.014 3.986 10 C -0.028 4.028 11 C -0.113 4.113 12 C -0.121 4.121 13 C -0.132 4.132 14 C -0.062 4.062 15 C -0.031 4.031 16 C -0.086 4.086 17 C -0.122 4.122 18 C -0.082 4.082 19 C -0.107 4.107 20 S -0.137 6.137 21 C -0.070 4.070 22 C -0.105 4.105 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.024 0.976 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.348 -12.685 -6.520 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.023 4.023 10 C -0.028 4.028 11 C -0.131 4.131 12 C -0.139 4.139 13 C -0.149 4.149 14 C -0.062 4.062 15 C -0.033 4.033 16 C -0.104 4.104 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.219 4.219 20 S 0.020 5.980 21 C -0.090 4.090 22 C -0.123 4.123 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.039 0.961 33 H 0.153 0.847 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.711 -13.374 -6.520 19.569 hybrid contribution -1.104 1.332 0.006 1.730 sum 11.607 -12.042 -6.514 17.949 Atomic orbital electron populations 1.69896 1.06280 1.27045 1.50474 1.25000 0.94736 0.99036 0.94421 0.86810 0.80419 0.83646 0.78686 1.20121 1.21200 1.18887 1.20919 0.88178 0.94694 1.51519 0.90822 1.18828 0.97529 0.88500 0.97490 1.20229 0.92632 0.98004 0.91966 1.21187 0.98977 0.94565 0.98345 1.20977 1.00397 0.95136 0.97370 1.20960 1.02722 0.99381 0.91882 1.18614 1.02035 0.94276 0.91280 1.18915 0.98255 0.93174 0.92966 1.21595 0.96756 1.00480 0.91561 1.21142 1.00042 0.94620 0.98358 1.21550 0.96826 0.94892 0.97003 1.21052 1.08680 0.96390 0.95767 1.85936 1.13820 0.99537 1.98685 1.21655 0.96049 0.93991 0.97319 1.21112 0.99326 0.93362 0.98533 0.92540 0.95252 0.95785 0.86116 0.86521 0.86651 0.84671 0.85137 0.85136 0.96090 0.84688 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.32 9.65 -34.44 -0.33 -14.65 16 8 H 0.07 2.25 7.98 -52.49 -0.42 1.84 16 9 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 10 C -0.03 -0.58 5.06 -104.67 -0.53 -1.11 16 11 C -0.11 -2.06 9.69 -39.52 -0.38 -2.45 16 12 C -0.12 -1.88 10.03 -39.63 -0.40 -2.28 16 13 C -0.13 -1.99 9.43 -39.25 -0.37 -2.36 16 14 C -0.06 -1.01 5.88 -104.90 -0.62 -1.62 16 15 C -0.03 -0.45 5.87 -104.93 -0.62 -1.06 16 16 C -0.09 -1.12 9.43 -39.21 -0.37 -1.49 16 17 C -0.12 -1.34 10.03 -39.66 -0.40 -1.74 16 18 C -0.08 -0.89 9.78 -39.31 -0.38 -1.27 16 19 C -0.11 -1.27 6.11 -39.08 -0.24 -1.51 16 20 S -0.14 -1.44 25.77 -107.50 -2.77 -4.21 16 21 C -0.07 -0.89 9.17 -39.02 -0.36 -1.25 16 22 C -0.11 -1.94 9.08 -39.25 -0.36 -2.30 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 25 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 26 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 27 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 28 H 0.12 1.43 6.21 -52.49 -0.33 1.11 16 29 H 0.14 1.70 6.20 -52.48 -0.33 1.38 16 30 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.07 0.73 9.07 97.61 0.89 1.62 16 33 H 0.14 1.56 6.20 -52.49 -0.33 1.24 16 34 H 0.12 2.13 6.20 -52.49 -0.33 1.80 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -30.04 303.86 -10.11 -40.15 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.45 Total: 2.61 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -5.57 Total: -33.01 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.77 Total: -26.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.77 Total: -4.21 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.04 -10.11 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.548 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds