Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47120 * 269.99873 * 3 2 1 5 5 H 1.48498 * 109.47021 * 30.00021 * 3 2 1 6 6 H 1.48501 * 109.46990 * 150.00106 * 3 2 1 7 7 C 1.37881 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.47192 * 179.97438 * 9 7 2 11 11 C 1.38341 * 119.94573 * 270.25749 * 10 9 7 12 12 C 1.38298 * 120.24553 * 180.25612 * 11 10 9 13 13 C 1.38038 * 120.12116 * 359.76878 * 12 11 10 14 14 C 1.39317 * 119.87608 * 359.97201 * 13 12 11 15 15 C 1.48395 * 120.11945 * 179.97438 * 14 13 12 16 16 C 1.39413 * 120.08346 * 179.75316 * 15 14 13 17 17 C 1.38062 * 120.03908 * 179.71881 * 16 15 14 18 18 C 1.38188 * 120.20706 * 0.55696 * 17 16 15 19 19 C 1.39021 * 120.16290 * 359.71540 * 18 17 16 20 20 S 1.76197 * 120.02291 * 179.97438 * 19 18 17 21 21 C 1.38798 * 119.96035 * 0.02562 * 19 18 17 22 22 C 1.37999 * 119.93478 * 89.99846 * 10 9 7 23 23 H 0.97000 * 119.99867 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46819 * 59.99774 * 9 7 2 25 25 H 1.08998 * 109.47295 * 299.99901 * 9 7 2 26 26 H 1.08001 * 119.87394 * 0.02562 * 11 10 9 27 27 H 1.08003 * 119.93961 * 179.74810 * 12 11 10 28 28 H 1.07995 * 120.06251 * 179.97438 * 13 12 11 29 29 H 1.08003 * 119.97627 * 0.02562 * 16 15 14 30 30 H 1.08005 * 119.89516 * 180.25148 * 17 16 15 31 31 H 1.08001 * 119.91729 * 179.69799 * 18 17 16 32 32 H 1.34503 * 103.00443 * 270.02659 * 20 19 18 33 33 H 1.07992 * 120.10460 * 179.97438 * 21 19 18 34 34 H 1.08002 * 120.06557 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.2395 -3.2674 1.1978 12 6 4.7055 -4.5695 1.2051 13 6 4.9436 -5.2268 0.0149 14 6 4.7131 -4.5762 -1.1953 15 6 4.9677 -5.2775 -2.4781 16 6 4.7319 -4.6276 -3.6886 17 6 4.9746 -5.2789 -4.8815 18 6 5.4408 -6.5797 -4.8811 19 6 5.6736 -7.2379 -3.6789 20 16 6.2674 -8.8968 -3.6826 21 6 5.4370 -6.5878 -2.4756 22 6 4.2430 -3.2643 -1.1968 23 1 -0.4850 0.8401 -0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8746 -0.6800 -0.8911 26 1 4.0545 -2.7568 2.1313 27 1 4.8838 -5.0729 2.1439 28 1 5.3079 -6.2434 0.0217 29 1 4.3637 -3.6122 -3.6932 30 1 4.7949 -4.7717 -5.8180 31 1 5.6245 -7.0864 -5.8170 32 1 5.1355 -9.6234 -3.6867 33 1 5.6166 -7.0970 -1.5404 34 1 4.0630 -2.7553 -2.1322 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242863551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = 27.711463 kcal Electronic energy + Delta-G solvation = -16829.832295 eV Core-core repulsion = 14203.528830 eV Total energy + Delta-G solvation = -2626.303465 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85076 -39.31569 -35.53215 -33.93746 -33.05134 -32.07310 -30.11784 -29.19585 -25.16724 -24.64495 -23.72418 -22.32571 -21.20348 -19.00437 -18.98733 -18.05250 -16.81376 -16.71951 -16.54769 -16.19203 -15.40248 -15.26770 -14.87298 -14.74187 -14.37215 -14.23066 -14.04339 -13.54832 -13.41717 -13.08510 -12.58784 -12.53583 -12.38740 -12.04329 -11.82523 -11.76548 -11.62113 -11.36774 -10.80496 -10.57501 -9.95217 -9.52617 -9.19562 -8.94901 -8.31558 -6.37079 -0.32622 0.02858 0.60021 0.65911 0.95640 1.35782 1.37663 1.49593 1.81675 2.34051 2.62966 3.02771 3.12755 3.57073 3.79578 3.99099 4.13894 4.16591 4.26133 4.34636 4.38371 4.54961 4.63406 4.77403 4.82062 5.01690 5.02254 5.17580 5.20194 5.29317 5.30609 5.39266 5.55028 5.60213 5.74849 5.82632 5.97047 6.13650 6.26661 6.69234 7.26619 8.85036 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028361 B = 0.003977 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.031315 B = 7038.598788 C = 7637.185026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.245 1.245 7 C -0.521 4.521 8 H 0.026 0.974 9 C 0.020 3.980 10 C -0.062 4.062 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.129 4.129 14 C -0.059 4.059 15 C -0.056 4.056 16 C -0.100 4.100 17 C -0.119 4.119 18 C -0.075 4.075 19 C -0.119 4.119 20 S -0.127 6.127 21 C -0.071 4.071 22 C -0.124 4.124 23 H 0.268 0.732 24 H 0.032 0.968 25 H 0.030 0.970 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.130 0.870 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.082 0.918 33 H 0.146 0.854 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.552 -13.880 -7.346 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.169 1.169 7 C -0.558 4.558 8 H 0.044 0.956 9 C -0.017 4.017 10 C -0.062 4.062 11 C -0.151 4.151 12 C -0.131 4.131 13 C -0.146 4.146 14 C -0.059 4.059 15 C -0.058 4.058 16 C -0.118 4.118 17 C -0.139 4.139 18 C -0.095 4.095 19 C -0.230 4.230 20 S 0.030 5.970 21 C -0.092 4.092 22 C -0.142 4.142 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.138 0.862 27 H 0.169 0.831 28 H 0.166 0.834 29 H 0.148 0.852 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.046 0.954 33 H 0.164 0.836 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.933 -14.584 -7.347 22.129 hybrid contribution -1.797 1.486 0.177 2.338 sum 13.136 -13.098 -7.170 19.888 Atomic orbital electron populations 1.70057 1.08344 1.28313 1.52221 1.25987 0.95594 1.03399 0.93897 0.85651 0.79520 0.78057 0.79431 1.18891 1.20836 1.16867 1.21145 0.90795 0.92951 1.50955 0.95562 1.18665 0.94294 0.91111 0.97621 1.20114 0.95249 0.97099 0.93715 1.21310 1.00146 0.96055 0.97580 1.21328 0.98662 0.93920 0.99176 1.21390 1.01397 1.00670 0.91156 1.18860 1.00613 0.93428 0.93026 1.18900 1.00404 0.94098 0.92366 1.21729 0.97178 1.00598 0.92270 1.21432 0.99082 0.94799 0.98578 1.21920 0.95138 0.94683 0.97781 1.21264 1.08561 0.97368 0.95833 1.85921 1.13938 0.98455 1.98650 1.21773 0.95681 0.93361 0.98345 1.21164 1.00499 0.94688 0.97848 0.92323 0.94936 0.95208 0.86165 0.83069 0.83363 0.85235 0.82527 0.82570 0.95381 0.83618 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 2 C 0.01 0.48 5.47 84.66 0.46 0.95 16 3 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 7 C -0.52 -30.24 9.65 25.60 0.25 -29.99 16 8 H 0.03 1.71 7.98 -2.91 -0.02 1.69 16 9 C 0.02 0.96 4.17 29.10 0.12 1.08 16 10 C -0.06 -2.59 5.06 -19.90 -0.10 -2.69 16 11 C -0.13 -4.90 9.69 22.31 0.22 -4.68 16 12 C -0.11 -3.35 10.03 22.24 0.22 -3.13 16 13 C -0.13 -3.65 9.43 22.48 0.21 -3.44 16 14 C -0.06 -1.90 5.88 -20.04 -0.12 -2.01 16 15 C -0.06 -1.54 5.87 -20.06 -0.12 -1.66 16 16 C -0.10 -2.54 9.43 22.51 0.21 -2.32 16 17 C -0.12 -2.36 10.03 22.22 0.22 -2.14 16 18 C -0.07 -1.40 9.78 22.45 0.22 -1.18 16 19 C -0.12 -2.51 6.11 22.59 0.14 -2.37 16 20 S -0.13 -2.30 25.77 -56.49 -1.46 -3.76 16 21 C -0.07 -1.68 9.17 22.63 0.21 -1.47 16 22 C -0.12 -4.70 9.08 22.48 0.20 -4.49 16 23 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 24 H 0.03 1.50 7.14 -2.39 -0.02 1.48 16 25 H 0.03 1.36 7.51 -2.39 -0.02 1.34 16 26 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 28 H 0.15 3.18 6.21 -2.91 -0.02 3.16 16 29 H 0.13 3.34 6.20 -2.91 -0.02 3.32 16 30 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.08 1.37 9.07 73.35 0.67 2.03 16 33 H 0.15 2.98 6.20 -2.91 -0.02 2.96 16 34 H 0.12 4.39 6.20 -2.91 -0.02 4.37 16 Total: -1.00 -67.42 303.86 4.81 -62.60 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.74 Total: 14.42 kcal Atomic # 6 Polarization: -61.90 SS G_CDS: 2.35 Total: -59.55 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.30 Total: -59.17 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -1.46 Total: -3.76 kcal Total: -67.42 4.81 -62.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242863551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.313 kcal (2) G-P(sol) polarization free energy of solvation -67.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds