Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48505 * 109.47094 * 269.99738 * 3 2 1 5 5 H 1.48494 * 109.47331 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46723 * 150.00049 * 3 2 1 7 7 C 1.37880 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47224 * 180.02562 * 9 7 2 11 11 N 1.30916 * 126.41028 * 90.30531 * 10 9 7 12 12 C 1.35382 * 105.57839 * 180.09822 * 11 10 9 13 13 C 1.47799 * 126.44084 * 179.88208 * 12 11 10 14 14 C 1.36313 * 119.81462 * 359.69346 * 13 12 11 15 15 C 1.39992 * 120.30866 * 180.02562 * 14 13 12 16 16 C 1.36262 * 119.75213 * 359.97438 * 15 14 13 17 17 C 1.40732 * 119.48157 * 0.02562 * 16 15 14 18 18 C 1.38963 * 132.93413 * 180.26396 * 17 16 15 19 19 C 1.38537 * 107.58077 * 180.16192 * 18 17 16 20 20 N 1.31490 * 109.01209 * 359.60202 * 19 18 17 21 21 N 1.37156 * 120.03984 * 0.02562 * 17 16 15 22 22 N 1.30996 * 107.10870 * 359.62240 * 12 11 10 23 23 O 1.21286 * 110.05007 * 0.23904 * 22 12 11 24 24 H 0.97000 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47287 * 59.99848 * 9 7 2 26 26 H 1.09007 * 109.47484 * 299.99641 * 9 7 2 27 27 H 1.08008 * 119.84804 * 0.02562 * 14 13 12 28 28 H 1.08000 * 120.12576 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.26336 * 179.97438 * 16 15 14 30 30 H 1.08002 * 126.21458 * 0.04661 * 18 17 16 31 31 H 1.08002 * 125.49884 * 179.87579 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0018 11 7 2.7300 -4.2385 1.0560 12 6 3.5562 -5.1974 0.5757 13 6 4.3628 -6.1427 1.3758 14 6 4.3169 -6.0893 2.7371 15 6 5.0770 -6.9794 3.5051 16 6 5.8654 -7.9030 2.8869 17 6 5.9056 -7.9495 1.4809 18 6 6.5888 -8.7570 0.5797 19 6 6.2448 -8.3435 -0.6969 20 7 5.3927 -7.3458 -0.6089 21 7 5.1555 -7.0696 0.7431 22 7 3.5019 -5.1334 -0.7316 23 8 2.7463 -4.2485 -1.0736 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 3.6911 -5.3569 3.2255 28 1 5.0387 -6.9342 4.5834 29 1 6.4556 -8.5933 3.4713 30 1 7.2667 -9.5600 0.8292 31 1 6.6132 -8.7742 -1.6163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001247445481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = 170.771787 kcal Electronic energy + Delta-G solvation = -19139.783526 eV Core-core repulsion = 16005.683159 eV Total energy + Delta-G solvation = -3134.100367 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.91689 -41.98243 -37.48710 -35.35949 -34.11925 -32.99238 -31.66331 -30.73658 -28.58040 -28.52329 -25.05302 -24.13719 -22.88088 -22.82415 -21.62308 -20.40768 -17.66012 -17.28531 -17.17151 -16.55986 -16.34236 -15.79363 -15.61336 -14.90945 -14.77988 -14.12339 -13.35602 -13.24566 -12.56990 -12.48987 -12.29614 -12.25689 -12.04421 -11.46518 -11.40557 -11.08679 -10.84265 -10.64210 -10.52898 -10.51720 -10.17526 -9.91315 -9.43238 -9.06715 -8.66022 -7.61884 -6.29723 -4.35910 0.31602 1.03344 1.90222 2.05511 2.57121 2.89330 3.21852 3.28310 3.32511 3.41883 3.45136 3.68253 4.26272 4.28722 4.46146 4.63225 4.85623 4.89967 5.09046 5.16238 5.36175 5.54502 5.56733 5.71533 5.91220 5.98681 6.25218 6.37071 6.40594 6.51704 6.79879 7.04766 7.10025 7.52835 7.63480 7.85379 8.64345 8.71610 9.29540 10.80598 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031809 B = 0.004172 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.035694 B = 6709.475083 C = 7027.807145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.101 3.899 10 C 0.244 3.756 11 N -0.489 5.489 12 C 0.170 3.830 13 C 0.226 3.774 14 C -0.116 4.116 15 C -0.082 4.082 16 C -0.109 4.109 17 C 0.100 3.900 18 C -0.286 4.286 19 C 0.065 3.935 20 N -0.290 5.290 21 N -0.267 5.267 22 N -0.353 5.353 23 O 0.078 5.922 24 H 0.268 0.732 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.168 0.832 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -14.694 5.708 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.080 0.920 9 C 0.062 3.938 10 C 0.026 3.974 11 N -0.223 5.223 12 C -0.099 4.099 13 C 0.119 3.881 14 C -0.140 4.140 15 C -0.105 4.105 16 C -0.130 4.130 17 C -0.019 4.019 18 C -0.316 4.316 19 C -0.112 4.112 20 N -0.112 5.112 21 N -0.036 5.036 22 N -0.059 5.059 23 O 0.015 5.985 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.186 0.814 28 H 0.166 0.834 29 H 0.168 0.832 30 H 0.173 0.827 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 9.189 -14.370 4.782 17.714 hybrid contribution 0.899 0.409 0.332 1.042 sum 10.088 -13.961 5.114 17.967 Atomic orbital electron populations 1.69918 1.06034 1.27718 1.48738 1.24915 0.94990 0.99446 0.94223 0.86347 0.79726 0.82143 0.78460 1.20222 1.20802 1.19663 1.20783 0.93277 0.88767 1.53700 0.91999 1.18286 0.89737 0.84288 1.01501 1.30178 0.94302 0.94515 0.78384 1.72039 1.12661 1.08505 1.29063 1.23111 1.00413 0.98175 0.88235 1.16795 0.92660 0.88954 0.89724 1.21007 1.01817 1.01662 0.89530 1.21122 0.94612 0.93613 1.01111 1.20704 1.01116 1.00728 0.90429 1.19659 0.96055 0.93349 0.92806 1.21291 1.11713 1.07839 0.90753 1.23891 0.94620 0.93716 0.98986 1.78266 1.22702 1.20542 0.89737 1.46227 1.28718 1.22114 1.06539 1.75197 1.09932 1.06737 1.14034 1.85324 1.42482 1.33924 1.36791 0.92185 0.92063 0.91040 0.81416 0.83356 0.83227 0.82710 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.18 13.29 55.43 0.74 -23.45 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.53 -13.88 9.09 -34.44 -0.31 -14.20 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 9 C 0.10 2.40 5.60 -29.04 -0.16 2.24 16 10 C 0.24 5.46 7.68 -12.98 -0.10 5.36 16 11 N -0.49 -10.54 11.17 -9.89 -0.11 -10.65 16 12 C 0.17 3.54 7.86 -156.06 -1.23 2.31 16 13 C 0.23 3.97 6.78 -82.16 -0.56 3.41 16 14 C -0.12 -1.58 9.61 -39.62 -0.38 -1.96 16 15 C -0.08 -0.81 10.05 -39.64 -0.40 -1.21 16 16 C -0.11 -1.11 10.10 -39.35 -0.40 -1.51 16 17 C 0.10 1.36 6.81 -84.27 -0.57 0.79 16 18 C -0.29 -3.44 10.92 -39.20 -0.43 -3.86 16 19 C 0.07 0.87 11.94 -17.59 -0.21 0.66 16 20 N -0.29 -5.17 11.84 30.46 0.36 -4.81 16 21 N -0.27 -4.59 3.93 -7.38 -0.03 -4.62 16 22 N -0.35 -7.78 11.44 30.98 0.35 -7.42 16 23 O 0.08 1.73 11.29 17.98 0.20 1.93 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 26 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 27 H 0.17 2.17 7.77 -52.48 -0.41 1.77 16 28 H 0.15 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 288.05 15.07 4.34 4.34 Total: -1.00 -31.18 288.05 -6.50 -37.67 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -2.49 Total: -2.21 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -4.85 Total: -6.27 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 1.31 Total: -50.94 kcal Atomic # 8 Polarization: 1.73 SS G_CDS: 0.20 Total: 1.93 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.18 -6.50 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247445481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.445 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds