Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00039 * 2 1 4 4 H 1.48505 * 109.47094 * 269.99738 * 3 2 1 5 5 H 1.48494 * 109.47331 * 30.00275 * 3 2 1 6 6 H 1.48505 * 109.46723 * 150.00049 * 3 2 1 7 7 C 1.37880 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50691 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47224 * 180.02562 * 9 7 2 11 11 N 1.30916 * 126.41028 * 90.30531 * 10 9 7 12 12 C 1.35382 * 105.57839 * 180.09822 * 11 10 9 13 13 C 1.47799 * 126.44084 * 179.88208 * 12 11 10 14 14 C 1.36313 * 119.81462 * 359.69346 * 13 12 11 15 15 C 1.39992 * 120.30866 * 180.02562 * 14 13 12 16 16 C 1.36262 * 119.75213 * 359.97438 * 15 14 13 17 17 C 1.40732 * 119.48157 * 0.02562 * 16 15 14 18 18 C 1.38963 * 132.93413 * 180.26396 * 17 16 15 19 19 C 1.38537 * 107.58077 * 180.16192 * 18 17 16 20 20 N 1.31490 * 109.01209 * 359.60202 * 19 18 17 21 21 N 1.37156 * 120.03984 * 0.02562 * 17 16 15 22 22 N 1.30996 * 107.10870 * 359.62240 * 12 11 10 23 23 O 1.21286 * 110.05007 * 0.23904 * 22 12 11 24 24 H 0.97000 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47287 * 59.99848 * 9 7 2 26 26 H 1.09007 * 109.47484 * 299.99641 * 9 7 2 27 27 H 1.08008 * 119.84804 * 0.02562 * 14 13 12 28 28 H 1.08000 * 120.12576 * 179.97438 * 15 14 13 29 29 H 1.07997 * 120.26336 * 179.97438 * 16 15 14 30 30 H 1.08002 * 126.21458 * 0.04661 * 18 17 16 31 31 H 1.08002 * 125.49884 * 179.87579 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0018 11 7 2.7300 -4.2385 1.0560 12 6 3.5562 -5.1974 0.5757 13 6 4.3628 -6.1427 1.3758 14 6 4.3169 -6.0893 2.7371 15 6 5.0770 -6.9794 3.5051 16 6 5.8654 -7.9030 2.8869 17 6 5.9056 -7.9495 1.4809 18 6 6.5888 -8.7570 0.5797 19 6 6.2448 -8.3435 -0.6969 20 7 5.3927 -7.3458 -0.6089 21 7 5.1555 -7.0696 0.7431 22 7 3.5019 -5.1334 -0.7316 23 8 2.7463 -4.2485 -1.0736 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6239 -2.5567 0.8904 27 1 3.6911 -5.3569 3.2255 28 1 5.0387 -6.9342 4.5834 29 1 6.4556 -8.5933 3.4713 30 1 7.2667 -9.5600 0.8292 31 1 6.6132 -8.7742 -1.6163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247445481.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = 150.128590 kcal Electronic energy + Delta-G solvation = -19140.678682 eV Core-core repulsion = 16005.683159 eV Total energy + Delta-G solvation = -3134.995523 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.57962 -42.98961 -38.54995 -36.91823 -35.87444 -34.44716 -33.20701 -31.78514 -30.41233 -29.60240 -26.36795 -26.00805 -24.25812 -23.92314 -22.90868 -21.71692 -19.41712 -18.73243 -18.32892 -18.25596 -17.68882 -16.82493 -16.71399 -16.70435 -15.94403 -15.29663 -14.90385 -14.48762 -14.30876 -14.11390 -13.57142 -13.33085 -13.14769 -13.08493 -12.92145 -12.64383 -12.59537 -12.27394 -12.07116 -11.99343 -11.65380 -11.47668 -10.85991 -10.68798 -10.42808 -8.63425 -8.32759 -6.46296 -0.78883 0.08096 0.27494 1.01889 1.17623 1.43191 1.44056 1.54776 1.79211 1.86954 2.17843 2.38258 2.39524 2.90143 3.04867 3.47849 3.62713 3.90017 3.99457 4.04398 4.23169 4.52728 4.63217 4.67423 4.69514 4.82668 5.04782 5.06088 5.11933 5.17392 5.44073 5.56664 5.61482 5.76918 5.84630 6.51615 6.57622 7.03988 7.22710 8.78047 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031809 B = 0.004172 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.035694 B = 6709.475083 C = 7027.807145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.111 3.889 10 C 0.236 3.764 11 N -0.492 5.492 12 C 0.183 3.817 13 C 0.159 3.841 14 C -0.086 4.086 15 C -0.085 4.085 16 C -0.079 4.079 17 C 0.075 3.925 18 C -0.273 4.273 19 C 0.057 3.943 20 N -0.355 5.355 21 N -0.284 5.284 22 N -0.377 5.377 23 O 0.064 5.936 24 H 0.274 0.726 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.170 0.830 28 H 0.198 0.802 29 H 0.200 0.800 30 H 0.195 0.805 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.655 -16.091 8.052 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.070 0.930 9 C 0.072 3.928 10 C 0.018 3.982 11 N -0.226 5.226 12 C -0.088 4.088 13 C 0.052 3.948 14 C -0.111 4.111 15 C -0.107 4.107 16 C -0.099 4.099 17 C -0.043 4.043 18 C -0.302 4.302 19 C -0.119 4.119 20 N -0.180 5.180 21 N -0.054 5.054 22 N -0.087 5.087 23 O 0.006 5.994 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.187 0.813 28 H 0.215 0.785 29 H 0.217 0.783 30 H 0.212 0.788 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 11.277 -15.759 7.105 20.639 hybrid contribution 0.352 0.651 -0.269 0.788 sum 11.629 -15.108 6.836 20.253 Atomic orbital electron populations 1.69995 1.07229 1.28854 1.49060 1.25691 0.95804 1.02531 0.93548 0.85382 0.78406 0.78199 0.78702 1.19553 1.19712 1.19691 1.20988 0.93010 0.90174 1.54304 0.93032 1.18004 0.89745 0.84279 1.00781 1.29859 0.94654 0.94677 0.79054 1.71998 1.12978 1.08871 1.28799 1.23752 0.99330 0.97642 0.88047 1.16994 0.95940 0.91162 0.90692 1.21390 1.00314 1.01080 0.88291 1.21607 0.93626 0.92429 1.03058 1.21393 0.99459 1.00063 0.88954 1.20500 0.96045 0.93161 0.94593 1.21823 1.11004 1.07746 0.89633 1.24517 0.93593 0.92702 1.01079 1.78163 1.25333 1.23145 0.91325 1.46262 1.29559 1.22868 1.06688 1.75173 1.11023 1.07397 1.15110 1.85292 1.42999 1.34375 1.36780 0.91704 0.92565 0.91864 0.81308 0.78521 0.78288 0.78803 0.76271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.37 13.29 21.45 0.28 -50.08 16 2 C 0.03 1.36 5.46 84.66 0.46 1.82 16 3 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -29.64 9.09 25.60 0.23 -29.40 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.11 5.53 5.60 29.10 0.16 5.70 16 10 C 0.24 11.12 7.68 88.36 0.68 11.80 16 11 N -0.49 -22.07 11.17 -302.36 -3.38 -25.44 16 12 C 0.18 7.89 7.86 136.99 1.08 8.97 16 13 C 0.16 5.61 6.78 40.35 0.27 5.89 16 14 C -0.09 -2.20 9.61 22.25 0.21 -1.99 16 15 C -0.09 -1.31 10.05 22.23 0.22 -1.09 16 16 C -0.08 -1.21 10.10 22.42 0.23 -0.98 16 17 C 0.08 1.85 6.81 39.09 0.27 2.12 16 18 C -0.27 -5.72 10.92 22.52 0.25 -5.47 16 19 C 0.06 1.46 11.94 84.82 1.01 2.47 16 20 N -0.36 -12.93 11.84 -57.54 -0.68 -13.62 16 21 N -0.28 -9.72 3.93 -177.27 -0.70 -10.41 16 22 N -0.38 -17.60 11.44 -58.86 -0.67 -18.28 16 23 O 0.06 3.00 11.29 74.42 0.84 3.84 16 24 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.06 3.23 8.14 -2.38 -0.02 3.21 16 27 H 0.17 4.17 7.77 -2.91 -0.02 4.14 16 28 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 30 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.22 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -71.84 288.05 3.97 -67.87 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.17 Total: 2.18 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.08 Total: -0.17 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -5.14 Total: -117.83 kcal Atomic # 8 Polarization: 3.00 SS G_CDS: 0.84 Total: 3.84 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.84 3.97 -67.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247445481.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.995 kcal (2) G-P(sol) polarization free energy of solvation -71.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds