Wall clock time and date at job start Mon Mar 30 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34876 * 116.99838 * 2 1 4 4 O 1.21609 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.46506 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.36756 * 126.17767 * 0.02562 * 5 3 2 7 7 N 1.30914 * 113.92944 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46856 * 0.02562 * 7 6 5 9 9 C 1.50696 * 124.70430 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47361 * 89.97196 * 9 8 7 11 11 C 1.46899 * 111.00005 * 293.95520 * 10 9 8 12 12 C 1.46904 * 111.00404 * 169.99822 * 10 9 8 13 13 C 1.50696 * 109.47409 * 189.99798 * 12 10 9 14 14 H 1.08004 * 119.99728 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00119 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99844 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47263 * 89.99870 * 17 15 13 19 19 H 1.48496 * 109.47269 * 210.00002 * 17 15 13 20 20 H 1.48504 * 109.46958 * 330.00286 * 17 15 13 21 21 S 1.70923 * 110.58677 * 359.97438 * 8 7 6 22 22 H 1.09001 * 109.47452 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47491 * 300.00727 * 1 2 3 24 24 H 1.09004 * 109.47436 * 60.00655 * 1 2 3 25 25 H 1.08001 * 123.03300 * 0.27068 * 6 5 3 26 26 H 1.09005 * 109.47365 * 209.96915 * 9 8 7 27 27 H 1.09000 * 109.47634 * 329.97100 * 9 8 7 28 28 H 1.08992 * 109.47173 * 59.99459 * 11 10 9 29 29 H 1.08997 * 109.47020 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.46948 * 299.99655 * 11 10 9 31 31 H 1.09007 * 109.46873 * 310.00454 * 12 10 9 32 32 H 1.09006 * 109.46708 * 69.99571 * 12 10 9 33 33 H 0.97000 * 120.00069 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5627 -0.0014 8 6 5.9282 1.8273 0.0003 9 6 7.3206 2.4036 0.0002 10 7 7.7724 2.5923 -1.3847 11 6 7.9285 1.3013 -2.0681 12 6 9.0200 3.3666 -1.4307 13 6 9.3213 3.7497 -2.8567 14 1 8.6526 3.4486 -3.6495 15 6 10.4500 4.4856 -3.1491 16 7 11.2640 4.8527 -2.1835 17 14 10.8230 4.9612 -4.9165 18 1 10.1927 6.2710 -5.2203 19 1 12.2928 5.0643 -5.1017 20 1 10.2800 3.9263 -5.8327 21 16 4.4915 2.7534 0.0011 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 4.0613 -0.8100 -0.0064 26 1 7.3162 3.3645 0.5150 27 1 7.9969 1.7198 0.5131 28 1 6.9721 0.7789 -2.0806 29 1 8.2634 1.4701 -3.0915 30 1 8.6657 0.6972 -1.5392 31 1 8.9107 4.2679 -0.8275 32 1 9.8372 2.7625 -1.0364 33 1 12.0579 5.3707 -2.3891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249462350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:29 Heat of formation + Delta-G solvation = -30.119845 kcal Electronic energy + Delta-G solvation = -17689.923578 eV Core-core repulsion = 14650.263097 eV Total energy + Delta-G solvation = -3039.660482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56023 -39.58340 -36.66808 -36.54089 -32.75900 -31.33320 -28.88085 -27.39494 -27.06851 -25.25224 -23.34949 -22.41651 -20.71103 -19.94540 -18.15416 -17.47762 -16.64269 -16.61356 -16.32804 -15.32945 -14.86374 -14.52291 -14.26878 -13.89207 -13.77338 -13.60548 -13.18758 -12.48889 -12.40236 -11.98678 -11.64561 -11.50843 -11.21169 -11.07084 -10.99775 -10.93831 -10.72897 -10.55933 -10.00028 -9.64482 -9.52352 -9.32206 -8.93085 -8.49039 -7.46718 -6.08763 -4.10381 0.09451 1.02656 1.68855 2.16761 2.65841 2.90844 3.30047 3.36163 3.39761 4.07079 4.39219 4.63878 4.82907 4.91046 4.94766 5.00872 5.12116 5.25533 5.28035 5.60315 5.84359 5.98862 6.05940 6.15618 6.32556 6.73771 7.11495 7.21153 7.45617 7.62192 7.68184 7.92376 8.05042 8.39926 8.96446 9.54083 11.02131 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.003636 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.018204 B = 7698.869316 C = 7854.913726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.351 6.351 3 C 0.553 3.447 4 O -0.508 6.508 5 C -0.331 4.331 6 C 0.135 3.865 7 N -0.488 5.488 8 C 0.088 3.912 9 C 0.116 3.884 10 N -0.535 5.535 11 C 0.037 3.963 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.273 1.273 21 S 0.265 5.735 22 H 0.104 0.896 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.187 0.813 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.018 0.982 31 H 0.033 0.967 32 H -0.003 1.003 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.811 -9.128 6.353 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.396 3.604 4 O -0.398 6.398 5 C -0.454 4.454 6 C -0.027 4.027 7 N -0.202 5.202 8 C -0.185 4.185 9 C -0.016 4.016 10 N -0.260 5.260 11 C -0.111 4.111 12 C 0.069 3.931 13 C -0.548 4.548 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.198 1.198 21 S 0.525 5.475 22 H 0.122 0.878 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.203 0.797 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.936 -7.661 6.140 19.576 hybrid contribution 0.384 -1.103 -0.527 1.281 sum -16.552 -8.764 5.613 19.552 Atomic orbital electron populations 1.23306 0.75627 1.03840 1.02778 1.86565 1.23669 1.31943 1.84593 1.19388 0.86669 0.81713 0.72582 1.90903 1.66527 1.35720 1.46636 1.24968 0.95513 0.99257 1.25675 1.22650 0.85955 1.00263 0.93866 1.66258 1.19649 1.16457 1.17856 1.27895 1.02157 0.91678 0.96791 1.20819 0.86494 0.99944 0.94310 1.62253 1.36219 1.17778 1.09781 1.22252 0.99033 0.89585 1.00252 1.19802 0.82856 0.92100 0.98353 1.21109 1.07359 1.33753 0.92544 0.91732 1.24975 0.96022 0.95930 0.97578 1.69950 1.13743 1.38199 1.31828 0.86468 0.77259 0.78983 0.84537 1.20562 1.21288 1.19827 1.84190 0.95523 1.05881 1.61892 0.87808 0.91743 0.91678 0.79659 0.88611 0.91787 0.93313 0.90516 0.96377 0.94868 0.98517 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.35 16 2 O -0.35 -3.81 10.37 -40.97 -0.42 -4.24 16 3 C 0.55 7.39 7.92 34.06 0.27 7.66 16 4 O -0.51 -7.89 16.76 -19.35 -0.32 -8.22 16 5 C -0.33 -4.49 6.51 -36.79 -0.24 -4.73 16 6 C 0.14 1.74 11.20 -18.48 -0.21 1.53 16 7 N -0.49 -7.38 9.70 -11.26 -0.11 -7.49 16 8 C 0.09 1.36 6.03 -13.31 -0.08 1.28 16 9 C 0.12 1.97 5.54 -4.98 -0.03 1.94 16 10 N -0.53 -11.10 4.74 -245.82 -1.17 -12.27 16 11 C 0.04 0.73 9.17 60.06 0.55 1.29 16 12 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 13 C -0.51 -13.88 8.46 -34.44 -0.29 -14.17 16 14 H 0.06 1.75 7.12 -52.48 -0.37 1.38 16 15 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 17 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 S 0.27 3.75 23.00 -107.50 -2.47 1.28 16 22 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.19 1.84 8.06 -52.49 -0.42 1.41 16 26 H 0.10 1.49 7.93 -51.93 -0.41 1.08 16 27 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 28 H 0.05 0.89 6.69 -51.93 -0.35 0.54 16 29 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 32 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -30.96 305.91 -7.24 -38.19 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -3.99 Total: -5.27 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 0.92 Total: 2.40 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.54 Total: -45.00 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.75 Total: -12.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.47 Total: 1.28 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.96 -7.24 -38.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249462350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.074 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds