Wall clock time and date at job start Mon Mar 30 2020 02:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34876 * 116.99838 * 2 1 4 4 O 1.21609 * 120.00277 * 359.97438 * 3 2 1 5 5 C 1.46506 * 119.99966 * 180.02562 * 3 2 1 6 6 C 1.36756 * 126.17767 * 0.02562 * 5 3 2 7 7 N 1.30914 * 113.92944 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46856 * 0.02562 * 7 6 5 9 9 C 1.50696 * 124.70430 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47361 * 89.97196 * 9 8 7 11 11 C 1.46899 * 111.00005 * 293.95520 * 10 9 8 12 12 C 1.46904 * 111.00404 * 169.99822 * 10 9 8 13 13 C 1.50696 * 109.47409 * 189.99798 * 12 10 9 14 14 H 1.08004 * 119.99728 * 0.02562 * 13 12 10 15 15 C 1.37878 * 120.00119 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99844 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47263 * 89.99870 * 17 15 13 19 19 H 1.48496 * 109.47269 * 210.00002 * 17 15 13 20 20 H 1.48504 * 109.46958 * 330.00286 * 17 15 13 21 21 S 1.70923 * 110.58677 * 359.97438 * 8 7 6 22 22 H 1.09001 * 109.47452 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47491 * 300.00727 * 1 2 3 24 24 H 1.09004 * 109.47436 * 60.00655 * 1 2 3 25 25 H 1.08001 * 123.03300 * 0.27068 * 6 5 3 26 26 H 1.09005 * 109.47365 * 209.96915 * 9 8 7 27 27 H 1.09000 * 109.47634 * 329.97100 * 9 8 7 28 28 H 1.08992 * 109.47173 * 59.99459 * 11 10 9 29 29 H 1.08997 * 109.47020 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.46948 * 299.99655 * 11 10 9 31 31 H 1.09007 * 109.46873 * 310.00454 * 12 10 9 32 32 H 1.09006 * 109.46708 * 69.99571 * 12 10 9 33 33 H 0.97000 * 120.00069 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 -0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.3913 0.2184 -0.0016 7 7 5.6543 0.5627 -0.0014 8 6 5.9282 1.8273 0.0003 9 6 7.3206 2.4036 0.0002 10 7 7.7724 2.5923 -1.3847 11 6 7.9285 1.3013 -2.0681 12 6 9.0200 3.3666 -1.4307 13 6 9.3213 3.7497 -2.8567 14 1 8.6526 3.4486 -3.6495 15 6 10.4500 4.4856 -3.1491 16 7 11.2640 4.8527 -2.1835 17 14 10.8230 4.9612 -4.9165 18 1 10.1927 6.2710 -5.2203 19 1 12.2928 5.0643 -5.1017 20 1 10.2800 3.9263 -5.8327 21 16 4.4915 2.7534 0.0011 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 4.0613 -0.8100 -0.0064 26 1 7.3162 3.3645 0.5150 27 1 7.9969 1.7198 0.5131 28 1 6.9721 0.7789 -2.0806 29 1 8.2634 1.4701 -3.0915 30 1 8.6657 0.6972 -1.5392 31 1 8.9107 4.2679 -0.8275 32 1 9.8372 2.7625 -1.0364 33 1 12.0579 5.3707 -2.3891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249462350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:28 Heat of formation + Delta-G solvation = -50.955872 kcal Electronic energy + Delta-G solvation = -17690.827096 eV Core-core repulsion = 14650.263097 eV Total energy + Delta-G solvation = -3040.564000 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56007 -40.70210 -38.24179 -37.55254 -34.76369 -32.59372 -30.19386 -28.93161 -28.18948 -26.74367 -24.91061 -23.48132 -22.39674 -21.04336 -19.27865 -18.71248 -18.20875 -17.61957 -17.53143 -16.94606 -16.37629 -15.99142 -15.57240 -15.27247 -15.03624 -14.72988 -14.22009 -14.09299 -13.70507 -13.38838 -13.16637 -12.91034 -12.68868 -12.57660 -12.53378 -12.34898 -12.05749 -11.93659 -11.86925 -11.38172 -10.76864 -10.66912 -10.58970 -10.06988 -9.17283 -8.19811 -6.28870 -1.02074 -0.06453 0.56995 1.08308 1.43893 1.44490 1.55369 1.76316 1.84052 2.41789 2.89980 3.13802 3.40690 3.68782 3.80097 4.12393 4.29412 4.30337 4.34465 4.45964 4.57104 4.70662 4.72027 4.94592 5.08789 5.14298 5.17902 5.25527 5.63875 6.00191 6.17714 6.45291 6.48398 6.54860 6.85396 7.40332 8.91150 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.003636 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.018204 B = 7698.869316 C = 7854.913726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.556 3.444 4 O -0.535 6.535 5 C -0.333 4.333 6 C 0.142 3.858 7 N -0.498 5.498 8 C 0.073 3.927 9 C 0.118 3.882 10 N -0.541 5.541 11 C 0.046 3.954 12 C 0.208 3.792 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.966 3.034 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.266 1.266 21 S 0.274 5.726 22 H 0.139 0.861 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.218 0.782 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.017 0.983 32 H -0.027 1.027 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -10.194 5.840 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.401 3.599 4 O -0.427 6.427 5 C -0.456 4.456 6 C -0.020 4.020 7 N -0.213 5.213 8 C -0.200 4.200 9 C -0.013 4.013 10 N -0.267 5.267 11 C -0.102 4.102 12 C 0.082 3.918 13 C -0.562 4.562 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 S 0.534 5.466 22 H 0.157 0.843 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.234 0.766 26 H 0.123 0.877 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.035 0.965 32 H -0.010 1.010 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.413 -8.757 5.633 21.153 hybrid contribution 0.695 -0.854 -0.303 1.141 sum -17.719 -9.611 5.330 20.850 Atomic orbital electron populations 1.23677 0.73537 1.06246 1.02871 1.86559 1.25629 1.30312 1.83837 1.19360 0.86479 0.82094 0.71980 1.90894 1.67016 1.36752 1.48051 1.25114 0.95994 0.99034 1.25462 1.23060 0.84867 1.01438 0.92638 1.66272 1.20899 1.16288 1.17855 1.27498 1.01738 0.92252 0.98491 1.20767 0.87600 1.00819 0.92118 1.62098 1.33842 1.18236 1.12497 1.22152 0.99808 0.89132 0.99111 1.19451 0.83891 0.91589 0.96867 1.21425 1.07487 1.33739 0.93596 0.91973 1.25825 0.95850 0.95848 1.01759 1.70061 1.14259 1.38930 1.33942 0.85429 0.77131 0.78818 0.79524 1.19925 1.20846 1.19056 1.84166 0.94956 1.06149 1.61351 0.84259 0.91548 0.91772 0.76573 0.87695 0.91641 0.91621 0.92159 0.96447 0.96478 1.00958 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.35 -6.66 10.37 -57.90 -0.60 -7.26 16 3 C 0.56 13.88 7.92 69.98 0.55 14.44 16 4 O -0.54 -16.00 16.76 19.48 0.33 -15.67 16 5 C -0.33 -8.43 6.51 24.08 0.16 -8.27 16 6 C 0.14 3.31 11.20 84.48 0.95 4.25 16 7 N -0.50 -14.20 9.70 -189.54 -1.84 -16.04 16 8 C 0.07 2.17 6.03 88.47 0.53 2.71 16 9 C 0.12 3.98 5.54 85.56 0.47 4.46 16 10 N -0.54 -22.57 4.74 -931.65 -4.42 -26.99 16 11 C 0.05 1.81 9.17 127.69 1.17 2.98 16 12 C 0.21 10.56 4.72 85.56 0.40 10.96 16 13 C -0.52 -28.87 8.46 25.60 0.22 -28.65 16 14 H 0.06 3.39 7.12 -2.91 -0.02 3.36 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 17 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 S 0.27 7.47 23.00 -56.49 -1.30 6.18 16 22 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.22 3.54 8.06 -2.91 -0.02 3.52 16 26 H 0.10 3.29 7.93 -2.38 -0.02 3.27 16 27 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 28 H 0.07 2.32 6.69 -2.39 -0.02 2.31 16 29 H 0.06 2.53 6.76 -2.39 -0.02 2.51 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.02 0.91 7.93 -2.38 -0.02 0.90 16 32 H -0.03 -1.50 8.12 -2.38 -0.02 -1.52 16 33 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -65.66 305.91 1.71 -63.94 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.12 Total: -0.67 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.12 Total: 5.21 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -5.97 Total: -97.29 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.27 Total: -22.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.30 Total: 6.18 kcal Total: -65.66 1.71 -63.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249462350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.986 kcal (2) G-P(sol) polarization free energy of solvation -65.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds