Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34801 * 117.00058 * 2 1 4 4 O 1.21554 * 120.00081 * 0.02562 * 3 2 1 5 5 C 1.47111 * 120.00189 * 179.97438 * 3 2 1 6 6 C 1.35290 * 123.15864 * 179.97438 * 5 3 2 7 7 S 1.70941 * 108.82103 * 179.77442 * 6 5 3 8 8 C 1.70767 * 91.13818 * 0.33610 * 7 6 5 9 9 C 1.50694 * 124.70853 * 179.91753 * 8 7 6 10 10 N 1.46905 * 109.47033 * 269.70191 * 9 8 7 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.50699 * 109.47140 * 189.99841 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46946 * 59.99897 * 17 15 13 19 19 H 1.48506 * 109.46938 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99580 * 17 15 13 21 21 N 1.28621 * 110.58050 * 359.65530 * 8 7 6 22 22 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47484 * 300.00112 * 1 2 3 24 24 H 1.08997 * 109.47327 * 59.99874 * 1 2 3 25 25 H 1.08002 * 125.58633 * 0.03674 * 6 5 3 26 26 H 1.08997 * 109.47644 * 149.70312 * 9 8 7 27 27 H 1.09000 * 109.47199 * 29.69589 * 9 8 7 28 28 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 29 29 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 30 30 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 31 31 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 32 32 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 33 33 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2205 0.0005 5 6 3.5330 1.2781 0.0006 6 6 4.2127 2.4479 0.0001 7 16 5.8887 2.1119 0.0074 8 6 5.5864 0.4312 0.0006 9 6 6.6537 -0.6326 0.0008 10 7 7.0004 -0.9787 -1.3841 11 6 5.8680 -1.6200 -2.0657 12 6 8.1947 -1.8329 -1.4302 13 6 8.6630 -1.9652 -2.8564 14 1 8.1268 -1.4651 -3.6494 15 6 9.7753 -2.7255 -3.1491 16 7 10.4280 -3.3348 -2.1834 17 14 10.3562 -2.8889 -4.9169 18 1 10.6883 -1.5453 -5.4550 19 1 11.5635 -3.7525 -4.9634 20 1 9.2791 -3.4985 -5.7375 21 7 4.3213 0.1994 0.0009 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.7690 3.4326 -0.0002 26 1 6.2829 -1.5193 0.5149 27 1 7.5394 -0.2586 0.5144 28 1 5.6393 -2.5672 -1.5774 29 1 4.9972 -0.9663 -2.0167 30 1 6.1275 -1.8020 -3.1085 31 1 8.9853 -1.3848 -0.8282 32 1 7.9515 -2.8190 -1.0346 33 1 11.2103 -3.8700 -2.3894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249472017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = -30.812489 kcal Electronic energy + Delta-G solvation = -17908.133291 eV Core-core repulsion = 14868.442774 eV Total energy + Delta-G solvation = -3039.690517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.78566 -39.34172 -36.70966 -36.40037 -32.73280 -31.14192 -28.29673 -27.96493 -27.02116 -25.39999 -24.04771 -21.71065 -20.43689 -19.84899 -18.89869 -17.06179 -16.56592 -16.52476 -16.35352 -15.32147 -14.91351 -14.67238 -14.19910 -13.79530 -13.74176 -13.38864 -13.07455 -12.40342 -12.22844 -11.93405 -11.93200 -11.56174 -11.13499 -10.93694 -10.91704 -10.86700 -10.73818 -10.52875 -9.98874 -9.73940 -9.63105 -9.31184 -8.96112 -8.46840 -7.41122 -6.06610 -4.08136 0.40569 1.21485 1.59969 1.71282 2.68315 3.07477 3.32415 3.36411 3.39473 3.98201 4.40399 4.77389 4.93517 5.01015 5.01601 5.05150 5.15843 5.30017 5.34288 5.55887 5.86036 5.97444 6.13797 6.21441 6.39109 6.78901 7.14975 7.25122 7.33551 7.71399 7.72651 7.96245 8.09049 8.43758 8.98563 9.56190 11.04262 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.004050 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.248583 B = 6912.098411 C = 7367.121315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.551 3.449 4 O -0.508 6.508 5 C 0.019 3.981 6 C -0.238 4.238 7 S 0.256 5.744 8 C 0.056 3.944 9 C 0.122 3.878 10 N -0.535 5.535 11 C 0.038 3.962 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.057 3.943 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.430 5.430 22 H 0.103 0.897 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.188 0.812 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.017 0.983 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.033 0.967 32 H -0.004 1.004 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.500 9.394 6.434 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.393 3.607 4 O -0.396 6.396 5 C -0.115 4.115 6 C -0.381 4.381 7 S 0.515 5.485 8 C -0.225 4.225 9 C -0.009 4.009 10 N -0.261 5.261 11 C -0.111 4.111 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 N -0.146 5.146 22 H 0.122 0.878 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.205 0.795 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.014 0.986 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.734 10.023 6.232 17.363 hybrid contribution -1.092 -0.913 -0.560 1.529 sum -13.826 9.110 5.673 17.502 Atomic orbital electron populations 1.23325 0.76183 1.03943 1.02455 1.86721 1.23102 1.31654 1.83491 1.19925 0.86921 0.81652 0.72218 1.90858 1.65889 1.36127 1.46770 1.19185 0.92217 0.88457 1.11686 1.26670 0.99946 1.03904 1.07592 1.83050 1.00548 1.03173 1.61746 1.27372 0.94616 0.98711 1.01787 1.20709 0.92739 0.93395 0.94090 1.62220 1.06392 1.47285 1.10164 1.22237 0.92495 0.96155 1.00186 1.19787 0.85426 0.89638 0.98230 1.21079 1.11430 1.29648 0.92568 0.91829 1.24969 0.96464 0.95537 0.97499 1.69940 1.19577 1.32430 1.31840 0.86543 0.78035 0.78081 0.84657 1.20128 1.21338 1.20264 1.67062 1.02586 1.30628 1.14282 0.87814 0.91874 0.91810 0.79472 0.92101 0.88758 0.96399 0.93219 0.90797 0.94910 0.98599 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 101.05 1.07 1.40 16 2 O -0.33 -4.68 10.50 -40.77 -0.43 -5.10 16 3 C 0.55 8.21 7.94 34.33 0.27 8.48 16 4 O -0.51 -7.89 16.51 -19.31 -0.32 -8.21 16 5 C 0.02 0.29 6.71 -84.55 -0.57 -0.28 16 6 C -0.24 -2.97 10.62 29.68 0.32 -2.65 16 7 S 0.26 3.11 22.92 -107.50 -2.46 0.64 16 8 C 0.06 0.86 6.01 -13.63 -0.08 0.78 16 9 C 0.12 2.08 5.54 -4.98 -0.03 2.06 16 10 N -0.53 -11.14 4.74 -245.82 -1.17 -12.31 16 11 C 0.04 0.76 9.18 60.06 0.55 1.31 16 12 C 0.19 4.82 4.72 -4.97 -0.02 4.80 16 13 C -0.51 -13.87 8.52 -34.44 -0.29 -14.17 16 14 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 N -0.43 -7.07 9.69 -8.53 -0.08 -7.16 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.19 1.91 8.03 -52.49 -0.42 1.48 16 26 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.94 6.49 -51.93 -0.34 0.61 16 30 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 31 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 32 H 0.00 -0.10 8.12 -51.93 -0.42 -0.52 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -31.20 305.21 -7.01 -38.21 By element: Atomic # 1 Polarization: -0.86 SS G_CDS: -3.98 Total: -4.84 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 1.12 Total: 3.21 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.51 Total: -44.72 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.75 Total: -13.32 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.46 Total: 0.64 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.20 -7.01 -38.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249472017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.399 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds