Wall clock time and date at job start Mon Mar 30 2020 02:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34801 * 117.00058 * 2 1 4 4 O 1.21554 * 120.00081 * 0.02562 * 3 2 1 5 5 C 1.47111 * 120.00189 * 179.97438 * 3 2 1 6 6 C 1.35290 * 123.15864 * 179.97438 * 5 3 2 7 7 S 1.70941 * 108.82103 * 179.77442 * 6 5 3 8 8 C 1.70767 * 91.13818 * 0.33610 * 7 6 5 9 9 C 1.50694 * 124.70853 * 179.91753 * 8 7 6 10 10 N 1.46905 * 109.47033 * 269.70191 * 9 8 7 11 11 C 1.46900 * 110.99850 * 293.95020 * 10 9 8 12 12 C 1.46906 * 111.00051 * 170.00053 * 10 9 8 13 13 C 1.50699 * 109.47140 * 189.99841 * 12 10 9 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46946 * 59.99897 * 17 15 13 19 19 H 1.48506 * 109.46938 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46921 * 299.99580 * 17 15 13 21 21 N 1.28621 * 110.58050 * 359.65530 * 8 7 6 22 22 H 1.09004 * 109.47465 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47484 * 300.00112 * 1 2 3 24 24 H 1.08997 * 109.47327 * 59.99874 * 1 2 3 25 25 H 1.08002 * 125.58633 * 0.03674 * 6 5 3 26 26 H 1.08997 * 109.47644 * 149.70312 * 9 8 7 27 27 H 1.09000 * 109.47199 * 29.69589 * 9 8 7 28 28 H 1.08996 * 109.47030 * 296.04770 * 11 10 9 29 29 H 1.08999 * 109.46702 * 56.04909 * 11 10 9 30 30 H 1.08996 * 109.46890 * 176.04778 * 11 10 9 31 31 H 1.09004 * 109.47040 * 309.99779 * 12 10 9 32 32 H 1.09000 * 109.47033 * 69.99731 * 12 10 9 33 33 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2011 0.0000 4 8 1.4019 2.2205 0.0005 5 6 3.5330 1.2781 0.0006 6 6 4.2127 2.4479 0.0001 7 16 5.8887 2.1119 0.0074 8 6 5.5864 0.4312 0.0006 9 6 6.6537 -0.6326 0.0008 10 7 7.0004 -0.9787 -1.3841 11 6 5.8680 -1.6200 -2.0657 12 6 8.1947 -1.8329 -1.4302 13 6 8.6630 -1.9652 -2.8564 14 1 8.1268 -1.4651 -3.6494 15 6 9.7753 -2.7255 -3.1491 16 7 10.4280 -3.3348 -2.1834 17 14 10.3562 -2.8889 -4.9169 18 1 10.6883 -1.5453 -5.4550 19 1 11.5635 -3.7525 -4.9634 20 1 9.2791 -3.4985 -5.7375 21 7 4.3213 0.1994 0.0009 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 3.7690 3.4326 -0.0002 26 1 6.2829 -1.5193 0.5149 27 1 7.5394 -0.2586 0.5144 28 1 5.6393 -2.5672 -1.5774 29 1 4.9972 -0.9663 -2.0167 30 1 6.1275 -1.8020 -3.1085 31 1 8.9853 -1.3848 -0.8282 32 1 7.9515 -2.8190 -1.0346 33 1 11.2103 -3.8700 -2.3894 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249472017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:31 Heat of formation + Delta-G solvation = -52.244180 kcal Electronic energy + Delta-G solvation = -17909.062639 eV Core-core repulsion = 14868.442774 eV Total energy + Delta-G solvation = -3040.619865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86198 -40.46725 -38.22058 -37.57695 -34.73713 -32.45027 -29.53942 -29.14989 -28.74771 -26.64273 -25.64013 -23.17766 -21.95696 -20.97317 -20.00504 -18.50821 -18.05248 -17.60292 -17.52613 -16.91783 -16.34862 -16.16988 -15.75883 -15.09005 -14.97720 -14.65647 -14.14301 -14.04096 -13.65214 -13.33803 -13.07048 -12.94847 -12.85758 -12.64300 -12.57832 -12.32961 -11.97225 -11.87357 -11.87034 -11.37782 -10.84559 -10.72722 -10.56864 -10.04478 -9.14003 -8.17527 -6.26622 -0.64818 0.18694 0.51128 0.57580 1.45195 1.47214 1.55096 1.73180 1.95820 2.43550 2.85019 3.15926 3.41149 3.70374 4.02711 4.13961 4.24138 4.26695 4.30086 4.48419 4.58862 4.65089 4.69954 4.79297 5.09021 5.13063 5.20040 5.27770 5.66240 6.02613 6.17328 6.28891 6.52428 6.66199 6.87586 7.42562 8.93239 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028733 B = 0.004050 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.248583 B = 6912.098411 C = 7367.121315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.550 3.450 4 O -0.521 6.521 5 C -0.010 4.010 6 C -0.223 4.223 7 S 0.333 5.667 8 C 0.019 3.981 9 C 0.125 3.875 10 N -0.538 5.538 11 C 0.048 3.952 12 C 0.208 3.792 13 C -0.524 4.524 14 H 0.062 0.938 15 C 0.006 3.994 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.450 5.450 22 H 0.129 0.871 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.213 0.787 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.011 0.989 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.020 0.980 32 H -0.032 1.032 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 10.867 5.910 18.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.393 3.607 4 O -0.412 6.412 5 C -0.145 4.145 6 C -0.366 4.366 7 S 0.592 5.408 8 C -0.260 4.260 9 C -0.006 4.006 10 N -0.263 5.263 11 C -0.100 4.100 12 C 0.082 3.918 13 C -0.563 4.563 14 H 0.080 0.920 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.790 3.210 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.166 5.166 22 H 0.148 0.852 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.230 0.770 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.038 0.962 32 H -0.014 1.014 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.152 11.496 5.714 18.379 hybrid contribution -1.037 -1.297 -0.330 1.693 sum -14.189 10.199 5.384 18.285 Atomic orbital electron populations 1.23654 0.73956 1.05916 1.03038 1.86701 1.25448 1.31406 1.83175 1.19977 0.87042 0.81757 0.71898 1.90836 1.66163 1.36411 1.47757 1.19316 0.92404 0.88939 1.13795 1.27083 1.00388 1.04386 1.04719 1.82769 0.99327 0.99281 1.59429 1.26994 0.94105 1.00607 1.04291 1.20655 0.94080 0.94113 0.91761 1.62090 1.05466 1.45833 1.12877 1.22112 0.92622 0.96152 0.99140 1.19452 0.86744 0.88784 0.96835 1.21401 1.11623 1.29624 0.93603 0.91982 1.25816 0.96586 0.95112 1.01693 1.70056 1.20069 1.33142 1.33969 0.85499 0.77583 0.78353 0.79563 1.19230 1.20927 1.19644 1.66983 1.03170 1.32163 1.14270 0.85242 0.91135 0.91390 0.76967 0.92817 0.87308 0.97074 0.91903 0.92200 0.96183 1.01380 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.35 -9.60 10.50 -57.13 -0.60 -10.20 16 3 C 0.55 15.90 7.94 70.15 0.56 16.45 16 4 O -0.52 -15.57 16.51 19.66 0.32 -15.25 16 5 C -0.01 -0.29 6.71 40.52 0.27 -0.02 16 6 C -0.22 -4.97 10.62 67.14 0.71 -4.25 16 7 S 0.33 7.20 22.92 -56.49 -1.29 5.91 16 8 C 0.02 0.58 6.01 88.58 0.53 1.11 16 9 C 0.12 4.23 5.54 85.55 0.47 4.70 16 10 N -0.54 -22.46 4.74 -931.65 -4.42 -26.88 16 11 C 0.05 1.96 9.18 127.69 1.17 3.13 16 12 C 0.21 10.55 4.72 85.56 0.40 10.95 16 13 C -0.52 -28.79 8.52 25.60 0.22 -28.58 16 14 H 0.06 3.36 7.10 -2.91 -0.02 3.34 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 17 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 N -0.45 -14.42 9.69 -180.91 -1.75 -16.17 16 22 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.21 3.57 8.03 -2.91 -0.02 3.55 16 26 H 0.05 1.88 8.12 -2.39 -0.02 1.86 16 27 H 0.11 3.29 7.93 -2.39 -0.02 3.27 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 2.38 6.49 -2.39 -0.02 2.36 16 30 H 0.06 2.56 6.86 -2.39 -0.02 2.54 16 31 H 0.02 1.06 7.93 -2.38 -0.02 1.04 16 32 H -0.03 -1.75 8.12 -2.39 -0.02 -1.77 16 33 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -66.69 305.21 1.69 -65.00 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.12 Total: 0.43 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.00 Total: 6.00 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.89 Total: -97.23 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.28 Total: -25.45 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 7.20 SS G_CDS: -1.29 Total: 5.91 kcal Total: -66.69 1.69 -65.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249472017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.760 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds