Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00165 * 2 1 4 4 O 1.42901 * 109.47018 * 75.00080 * 3 2 1 5 5 C 1.35925 * 116.99615 * 75.00159 * 4 3 2 6 6 C 1.38740 * 120.04546 * 359.72204 * 5 4 3 7 7 C 1.38126 * 119.95501 * 179.74679 * 6 5 4 8 8 C 1.38384 * 120.04469 * 0.53338 * 7 6 5 9 9 Cl 1.73599 * 119.95984 * 179.76596 * 8 7 6 10 10 C 1.38346 * 120.08151 * 359.74025 * 8 7 6 11 11 C 1.38157 * 120.04531 * 359.97438 * 10 8 7 12 12 C 1.50704 * 120.02126 * 180.02562 * 11 10 8 13 13 C 1.53010 * 109.46788 * 265.01627 * 12 11 10 14 14 C 1.50695 * 109.46808 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00276 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99728 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00152 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99938 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47165 * 59.99737 * 18 16 14 20 20 H 1.48501 * 109.46939 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47026 * 299.99136 * 18 16 14 22 22 H 1.09003 * 109.47195 * 299.99610 * 1 2 3 23 23 H 1.08993 * 109.47349 * 59.99852 * 1 2 3 24 24 H 1.09004 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47276 * 315.00336 * 3 2 1 26 26 H 1.09001 * 109.47415 * 194.99876 * 3 2 1 27 27 H 1.07999 * 120.02185 * 0.02562 * 6 5 4 28 28 H 1.07996 * 119.97486 * 180.27442 * 7 6 5 29 29 H 1.08010 * 119.97376 * 180.02562 * 10 8 7 30 30 H 1.08998 * 109.47406 * 25.01471 * 12 11 10 31 31 H 1.09000 * 109.47011 * 145.01919 * 12 11 10 32 32 H 1.08998 * 109.47020 * 300.00081 * 13 12 11 33 33 H 1.08999 * 109.46986 * 59.99809 * 13 12 11 34 34 H 0.96996 * 120.00555 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8823 1.3014 5 6 2.7190 1.4128 2.2670 6 6 3.6339 0.4133 1.9690 7 6 4.4836 -0.0587 2.9504 8 6 4.4153 0.4568 4.2328 9 17 5.4801 -0.1423 5.4659 10 6 3.4997 1.4496 4.5332 11 6 2.6521 1.9285 3.5529 12 6 1.6554 3.0103 3.8805 13 6 0.3067 2.3742 4.2234 14 6 -0.6902 3.4560 4.5505 15 1 -0.3916 4.4934 4.5175 16 6 -1.9832 3.1212 4.8928 17 7 -2.3467 1.8579 4.9334 18 14 -3.2187 4.4621 5.2989 19 1 -3.3788 5.3593 4.1265 20 1 -4.5277 3.8448 5.6315 21 1 -2.7321 5.2481 6.4610 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.4942 1.9329 -0.7266 26 1 3.0649 1.2336 -0.2660 27 1 3.6848 0.0078 0.9694 28 1 5.1990 -0.8336 2.7177 29 1 3.4481 1.8510 5.5346 30 1 2.0124 3.5870 4.7337 31 1 1.5381 3.6690 3.0201 32 1 -0.0504 1.7974 3.3702 33 1 0.4239 1.7154 5.0838 34 1 -3.2564 1.6224 5.1738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -84.774363 kcal Electronic energy + Delta-G solvation = -18425.279709 eV Core-core repulsion = 15348.912772 eV Total energy + Delta-G solvation = -3076.366937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21355 -38.16564 -36.57686 -35.80478 -34.05094 -32.13108 -29.79888 -28.86988 -27.53905 -25.22685 -25.03598 -22.17652 -21.85329 -20.24721 -18.08922 -16.79303 -16.73911 -16.36539 -15.73610 -15.45077 -14.69078 -14.48110 -13.96408 -13.82710 -13.29066 -12.98626 -12.72267 -12.66630 -12.29435 -11.87407 -11.70042 -11.41962 -11.18819 -10.94411 -10.88085 -10.80334 -10.53904 -10.44280 -10.03007 -9.78972 -9.61685 -9.08590 -8.51401 -8.31985 -7.75894 -5.97255 -3.99845 1.48741 1.54095 2.38003 3.34142 3.38513 3.40659 3.40980 3.70402 3.95812 4.47579 4.91500 4.95528 5.03210 5.17132 5.38103 5.39995 5.43493 5.56621 5.64818 5.80871 5.96593 6.06188 6.15797 6.39749 6.47787 6.62034 6.72206 6.90606 6.93201 7.11924 7.60188 7.71512 7.87083 8.03455 8.43705 9.06747 9.63484 11.13740 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.006093 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.754206 B = 4594.059754 C = 6071.693789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.210 3.790 4 O -0.312 6.312 5 C 0.134 3.866 6 C -0.186 4.186 7 C -0.091 4.091 8 C -0.066 4.066 9 Cl -0.086 7.086 10 C -0.079 4.079 11 C -0.074 4.074 12 C -0.071 4.071 13 C 0.034 3.966 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.062 0.938 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.177 -3.421 -8.504 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C 0.096 3.904 4 O -0.227 6.227 5 C 0.089 3.911 6 C -0.205 4.205 7 C -0.110 4.110 8 C -0.092 4.092 9 Cl -0.057 7.057 10 C -0.098 4.098 11 C -0.075 4.075 12 C -0.108 4.108 13 C -0.003 4.003 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.153 0.847 28 H 0.146 0.854 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.067 -3.612 -8.355 15.115 hybrid contribution -0.770 0.548 0.202 0.967 sum 11.297 -3.064 -8.153 14.265 Atomic orbital electron populations 1.22876 0.79572 1.03080 1.01321 1.87986 1.21622 1.28444 1.93736 1.24165 0.99247 0.83635 0.83315 1.86380 1.57000 1.59755 1.19613 1.18837 0.89829 0.93469 0.88923 1.21135 0.98702 1.00024 1.00612 1.20636 0.99509 0.99938 0.90942 1.20723 0.97603 1.00782 0.90125 1.98329 1.65008 1.87695 1.54679 1.20809 0.93730 0.95503 0.99715 1.19739 0.97943 1.00210 0.89648 1.20711 0.95120 0.94231 1.00728 1.19025 0.88660 0.95876 0.96761 1.21206 0.95246 0.93080 1.46240 0.92700 1.25005 0.98393 0.95281 0.95654 1.69964 1.18537 1.16141 1.48754 0.86680 0.80509 0.82056 0.78876 1.20283 1.21332 1.20234 0.91931 0.93930 0.89602 0.87937 0.88506 0.84680 0.85366 0.84492 0.92178 0.91583 0.96286 0.96676 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.89 101.05 1.10 1.47 16 2 O -0.40 -5.63 10.17 -59.04 -0.60 -6.23 16 3 C 0.21 2.64 6.39 101.05 0.65 3.28 16 4 O -0.31 -5.32 9.33 -43.32 -0.40 -5.72 16 5 C 0.13 2.33 6.60 -39.22 -0.26 2.08 16 6 C -0.19 -2.75 8.78 -39.44 -0.35 -3.10 16 7 C -0.09 -1.30 9.82 -39.57 -0.39 -1.69 16 8 C -0.07 -1.01 6.32 -39.49 -0.25 -1.26 16 9 Cl -0.09 -1.18 28.95 -51.86 -1.50 -2.68 16 10 C -0.08 -1.35 9.46 -39.57 -0.37 -1.72 16 11 C -0.07 -1.40 5.15 -104.48 -0.54 -1.94 16 12 C -0.07 -1.50 5.01 -27.88 -0.14 -1.63 16 13 C 0.03 0.89 4.96 -27.88 -0.14 0.75 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 1.03 8.03 -51.93 -0.42 0.62 16 23 H 0.04 0.47 8.11 -51.93 -0.42 0.05 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.04 8.01 -51.93 -0.42 0.62 16 26 H 0.10 0.96 6.71 -51.93 -0.35 0.62 16 27 H 0.14 1.71 5.85 -52.49 -0.31 1.41 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 2.22 8.06 -52.48 -0.42 1.79 16 30 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 31 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -31.28 309.59 -7.61 -38.88 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -4.38 Total: -2.07 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -1.10 Total: -17.24 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.00 Total: -11.95 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.28 -7.61 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.893 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds