Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00165 * 2 1 4 4 O 1.42901 * 109.47018 * 75.00080 * 3 2 1 5 5 C 1.35925 * 116.99615 * 75.00159 * 4 3 2 6 6 C 1.38740 * 120.04546 * 359.72204 * 5 4 3 7 7 C 1.38126 * 119.95501 * 179.74679 * 6 5 4 8 8 C 1.38384 * 120.04469 * 0.53338 * 7 6 5 9 9 Cl 1.73599 * 119.95984 * 179.76596 * 8 7 6 10 10 C 1.38346 * 120.08151 * 359.74025 * 8 7 6 11 11 C 1.38157 * 120.04531 * 359.97438 * 10 8 7 12 12 C 1.50704 * 120.02126 * 180.02562 * 11 10 8 13 13 C 1.53010 * 109.46788 * 265.01627 * 12 11 10 14 14 C 1.50695 * 109.46808 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00276 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99728 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00152 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99938 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47165 * 59.99737 * 18 16 14 20 20 H 1.48501 * 109.46939 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47026 * 299.99136 * 18 16 14 22 22 H 1.09003 * 109.47195 * 299.99610 * 1 2 3 23 23 H 1.08993 * 109.47349 * 59.99852 * 1 2 3 24 24 H 1.09004 * 109.47278 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47276 * 315.00336 * 3 2 1 26 26 H 1.09001 * 109.47415 * 194.99876 * 3 2 1 27 27 H 1.07999 * 120.02185 * 0.02562 * 6 5 4 28 28 H 1.07996 * 119.97486 * 180.27442 * 7 6 5 29 29 H 1.08010 * 119.97376 * 180.02562 * 10 8 7 30 30 H 1.08998 * 109.47406 * 25.01471 * 12 11 10 31 31 H 1.09000 * 109.47011 * 145.01919 * 12 11 10 32 32 H 1.08998 * 109.47020 * 300.00081 * 13 12 11 33 33 H 1.08999 * 109.46986 * 59.99809 * 13 12 11 34 34 H 0.96996 * 120.00555 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8823 1.3014 5 6 2.7190 1.4128 2.2670 6 6 3.6339 0.4133 1.9690 7 6 4.4836 -0.0587 2.9504 8 6 4.4153 0.4568 4.2328 9 17 5.4801 -0.1423 5.4659 10 6 3.4997 1.4496 4.5332 11 6 2.6521 1.9285 3.5529 12 6 1.6554 3.0103 3.8805 13 6 0.3067 2.3742 4.2234 14 6 -0.6902 3.4560 4.5505 15 1 -0.3916 4.4934 4.5175 16 6 -1.9832 3.1212 4.8928 17 7 -2.3467 1.8579 4.9334 18 14 -3.2187 4.4621 5.2989 19 1 -3.3788 5.3593 4.1265 20 1 -4.5277 3.8448 5.6315 21 1 -2.7321 5.2481 6.4610 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 1.4942 1.9329 -0.7266 26 1 3.0649 1.2336 -0.2660 27 1 3.6848 0.0078 0.9694 28 1 5.1990 -0.8336 2.7177 29 1 3.4481 1.8510 5.5346 30 1 2.0124 3.5870 4.7337 31 1 1.5381 3.6690 3.0201 32 1 -0.0504 1.7974 3.3702 33 1 0.4239 1.7154 5.0838 34 1 -3.2564 1.6224 5.1738 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = -102.666379 kcal Electronic energy + Delta-G solvation = -18426.055565 eV Core-core repulsion = 15348.912772 eV Total energy + Delta-G solvation = -3077.142793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43342 -39.33218 -37.72466 -37.00379 -35.91095 -33.99429 -31.17664 -30.45167 -28.62476 -26.99147 -26.23294 -23.87496 -23.09885 -21.87496 -19.28970 -18.54007 -17.88975 -17.85445 -17.05002 -16.59478 -16.52161 -15.88542 -15.21892 -15.08121 -14.63333 -14.53261 -14.33860 -14.10233 -13.84376 -13.39942 -13.08226 -12.81350 -12.69821 -12.68400 -12.43338 -12.03427 -11.94785 -11.72695 -11.70434 -11.48619 -11.21339 -11.08243 -10.54007 -9.85327 -9.04852 -8.17952 -6.29995 0.23933 0.27258 1.19290 1.40032 1.43430 1.51246 2.29427 2.41283 2.57253 2.82984 3.14423 3.75750 3.80392 4.05381 4.14411 4.23144 4.29342 4.43014 4.48690 4.55594 4.59518 4.83429 4.86864 4.90428 5.08800 5.20195 5.22119 5.27665 5.50280 5.62298 5.79327 5.83183 5.85807 6.24015 6.42792 6.86016 7.38814 8.93381 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.006093 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.754206 B = 4594.059754 C = 6071.693789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.198 3.802 4 O -0.339 6.339 5 C 0.125 3.875 6 C -0.180 4.180 7 C -0.079 4.079 8 C -0.073 4.073 9 Cl -0.070 7.070 10 C -0.085 4.085 11 C -0.109 4.109 12 C -0.054 4.054 13 C 0.046 3.954 14 C -0.543 4.543 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.266 1.266 22 H 0.019 0.981 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.064 0.936 31 H 0.062 0.938 32 H -0.013 1.013 33 H -0.016 1.016 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.182 -3.337 -9.503 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.086 3.914 4 O -0.255 6.255 5 C 0.080 3.920 6 C -0.199 4.199 7 C -0.097 4.097 8 C -0.099 4.099 9 Cl -0.041 7.041 10 C -0.104 4.104 11 C -0.110 4.110 12 C -0.091 4.091 13 C 0.009 3.991 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.208 1.208 21 H -0.191 1.191 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.116 0.884 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.006 0.994 33 H 0.003 0.997 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.091 -3.522 -9.361 16.474 hybrid contribution -1.020 0.446 0.477 1.211 sum 12.071 -3.076 -8.884 15.300 Atomic orbital electron populations 1.22870 0.79632 1.03705 1.00468 1.87958 1.21660 1.29452 1.93605 1.24708 1.01379 0.83460 0.81839 1.86357 1.57381 1.60634 1.21158 1.19014 0.90382 0.93994 0.88637 1.21396 0.97618 0.98882 1.01970 1.21044 0.99128 0.99565 0.90012 1.20802 0.97522 1.00426 0.91194 1.98334 1.64242 1.87347 1.54157 1.20850 0.94059 0.96111 0.99388 1.19579 0.98959 1.01118 0.91326 1.20361 0.93297 0.94870 1.00608 1.18802 0.91408 0.94894 0.94041 1.21649 0.96213 0.93815 1.46368 0.92039 1.25972 1.00621 0.97807 0.95234 1.70111 1.19155 1.18487 1.49535 0.85513 0.77557 0.78902 0.79150 1.19071 1.20838 1.19113 0.96177 0.91287 0.88370 0.85589 0.85388 0.82117 0.82094 0.84561 0.91703 0.91959 0.99429 0.99739 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.89 113.37 1.23 2.01 16 2 O -0.41 -10.97 10.17 -126.21 -1.28 -12.25 16 3 C 0.20 4.67 6.39 113.37 0.72 5.39 16 4 O -0.34 -11.61 9.33 -69.93 -0.65 -12.27 16 5 C 0.12 4.31 6.60 22.50 0.15 4.46 16 6 C -0.18 -4.96 8.78 22.36 0.20 -4.76 16 7 C -0.08 -2.04 9.82 22.28 0.22 -1.83 16 8 C -0.07 -2.14 6.32 22.33 0.14 -2.00 16 9 Cl -0.07 -1.79 28.95 -2.72 -0.08 -1.87 16 10 C -0.09 -2.93 9.46 22.28 0.21 -2.72 16 11 C -0.11 -4.19 5.15 -19.77 -0.10 -4.29 16 12 C -0.05 -2.38 5.01 29.85 0.15 -2.23 16 13 C 0.05 2.52 4.96 29.85 0.15 2.67 16 14 C -0.54 -31.63 9.11 25.60 0.23 -31.39 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 18 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H 0.02 0.69 8.03 -2.39 -0.02 0.67 16 23 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 24 H 0.10 2.30 8.14 -2.38 -0.02 2.29 16 25 H 0.13 2.31 8.01 -2.39 -0.02 2.29 16 26 H 0.13 2.16 6.71 -2.39 -0.02 2.15 16 27 H 0.16 3.54 5.85 -2.91 -0.02 3.52 16 28 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.06 2.71 8.05 -2.39 -0.02 2.69 16 31 H 0.06 2.73 7.69 -2.39 -0.02 2.71 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.34 309.59 5.16 -64.19 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.09 Total: 7.18 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 3.77 Total: -34.15 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.28 Total: -57.57 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -1.94 Total: -24.52 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -69.34 5.16 -64.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.477 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds