Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00438 * 2 1 4 4 O 1.42898 * 109.47377 * 74.99277 * 3 2 1 5 5 C 1.35922 * 116.99623 * 75.00120 * 4 3 2 6 6 C 1.38708 * 120.06401 * 0.25550 * 5 4 3 7 7 C 1.38149 * 119.95752 * 180.25491 * 6 5 4 8 8 C 1.38281 * 120.07817 * 359.48582 * 7 6 5 9 9 C 1.50701 * 119.94256 * 180.23535 * 8 7 6 10 10 C 1.53001 * 109.46888 * 90.00245 * 9 8 7 11 11 C 1.50701 * 109.46888 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00011 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99973 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47224 * 60.00318 * 15 13 11 17 17 H 1.48503 * 109.47236 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47243 * 300.00596 * 15 13 11 19 19 C 1.38250 * 120.11543 * 0.25948 * 8 7 6 20 20 C 1.38248 * 120.04553 * 359.97438 * 19 8 7 21 21 Cl 1.73602 * 120.04086 * 180.02562 * 20 19 8 22 22 H 1.09001 * 109.47220 * 300.00772 * 1 2 3 23 23 H 1.09005 * 109.46668 * 60.00178 * 1 2 3 24 24 H 1.08988 * 109.47645 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46417 * 314.99163 * 3 2 1 26 26 H 1.09002 * 109.46834 * 194.99539 * 3 2 1 27 27 H 1.07997 * 120.01983 * 0.02562 * 6 5 4 28 28 H 1.08002 * 119.96421 * 179.77139 * 7 6 5 29 29 H 1.08996 * 109.46729 * 210.00082 * 9 8 7 30 30 H 1.09000 * 109.46698 * 330.00349 * 9 8 7 31 31 H 1.09003 * 109.47016 * 299.99748 * 10 9 8 32 32 H 1.08999 * 109.47228 * 59.99979 * 10 9 8 33 33 H 0.96998 * 120.00330 * 179.97438 * 14 13 11 34 34 H 1.08003 * 119.97733 * 179.97438 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 8 1.8855 1.8825 1.3013 5 6 2.7188 1.4131 2.2670 6 6 3.6412 0.4215 1.9670 7 6 4.4836 -0.0577 2.9515 8 6 4.4156 0.4574 4.2330 9 6 5.3396 -0.0639 5.3033 10 6 6.6263 0.7638 5.3136 11 6 7.5501 0.2429 6.3843 12 1 7.2493 -0.5945 6.9965 13 6 8.7792 0.8353 6.5824 14 7 9.1453 1.8553 5.8372 15 14 9.9239 0.1901 7.9100 16 1 10.2514 -1.2317 7.6331 17 1 11.1729 0.9933 7.9200 18 1 9.2573 0.2959 9.2327 19 6 3.5010 1.4495 4.5342 20 6 2.6524 1.9293 3.5539 21 17 1.5045 3.1755 3.9321 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0275 0.0005 25 1 1.4943 1.9328 -0.7268 26 1 3.0650 1.2335 -0.2659 27 1 3.6983 0.0218 0.9654 28 1 5.1993 -0.8324 2.7190 29 1 4.8505 0.0127 6.2743 30 1 5.5802 -1.1072 5.0989 31 1 7.1154 0.6872 4.3424 32 1 6.3856 1.8071 5.5179 33 1 10.0099 2.2723 5.9768 34 1 3.4495 1.8499 5.5359 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060448.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -101.998409 kcal Electronic energy + Delta-G solvation = -17873.563703 eV Core-core repulsion = 14796.449875 eV Total energy + Delta-G solvation = -3077.113828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37435 -39.45141 -37.65180 -37.40676 -35.63756 -33.56396 -31.84822 -30.25800 -28.62901 -27.01911 -25.90219 -23.78657 -23.47614 -21.69269 -19.50696 -18.53796 -17.93293 -17.86458 -16.75441 -16.53607 -16.44573 -15.93004 -15.22537 -15.09841 -14.98338 -14.51659 -14.38192 -14.16614 -13.65142 -13.39157 -12.95785 -12.83191 -12.68519 -12.45251 -12.42741 -12.16450 -11.96247 -11.81636 -11.66066 -11.42491 -11.20246 -11.09009 -10.52847 -9.85141 -9.07161 -8.17093 -6.28970 0.16876 0.32579 1.15909 1.42462 1.45324 1.53134 2.14759 2.42745 2.58794 2.83097 3.15865 3.76351 3.89072 4.02765 4.09872 4.31803 4.32250 4.38621 4.49039 4.55672 4.61412 4.85577 4.86909 4.89227 5.02232 5.18249 5.22066 5.51109 5.52342 5.61657 5.83691 5.85299 5.87266 6.25092 6.30134 6.88043 7.40378 8.94067 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.003902 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.359662 B = 7173.874024 C = 7701.107383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.201 3.799 4 O -0.330 6.330 5 C 0.122 3.878 6 C -0.176 4.176 7 C -0.081 4.081 8 C -0.099 4.099 9 C -0.061 4.061 10 C 0.035 3.965 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.964 3.036 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.267 1.267 19 C -0.086 4.086 20 C -0.076 4.076 21 Cl -0.064 7.064 22 H 0.038 0.962 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.064 0.936 30 H 0.071 0.929 31 H -0.007 1.007 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 -2.178 -12.218 21.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.089 3.911 4 O -0.247 6.247 5 C 0.076 3.924 6 C -0.195 4.195 7 C -0.100 4.100 8 C -0.100 4.100 9 C -0.099 4.099 10 C -0.002 4.002 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.104 4.104 20 C -0.103 4.103 21 Cl -0.035 7.035 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.115 0.885 25 H 0.154 0.846 26 H 0.132 0.868 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.011 0.989 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.219 -1.971 -12.218 21.205 hybrid contribution 0.656 0.272 0.641 0.957 sum -16.563 -1.698 -11.577 20.279 Atomic orbital electron populations 1.22964 0.79205 1.03898 1.01028 1.88034 1.22321 1.29143 1.93552 1.24662 1.01242 0.83657 0.81573 1.86282 1.56818 1.60628 1.20925 1.18572 0.91616 0.94468 0.87706 1.21380 0.97437 0.98953 1.01681 1.21189 0.97772 0.99335 0.91659 1.20102 0.96574 0.96982 0.96327 1.20526 0.94144 0.99489 0.95699 1.18937 0.91787 0.94105 0.95336 1.21695 1.01799 1.16238 1.18467 0.91783 1.25975 0.99968 0.95132 0.98690 1.70101 1.21959 1.23923 1.41379 0.85513 0.77678 0.78600 0.79333 1.18992 1.21055 1.19209 1.20881 0.94192 0.96342 0.99023 1.20237 0.98929 0.98173 0.92932 1.98323 1.58910 1.51810 1.94432 0.94363 0.91565 0.88536 0.84649 0.86806 0.82245 0.84099 0.91703 0.91076 0.98851 0.99308 0.92828 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.89 113.37 1.23 1.59 16 2 O -0.41 -7.84 10.20 -126.21 -1.29 -9.13 16 3 C 0.20 3.39 6.39 113.37 0.72 4.11 16 4 O -0.33 -8.18 9.65 -69.90 -0.67 -8.86 16 5 C 0.12 3.56 6.62 22.52 0.15 3.71 16 6 C -0.18 -4.88 8.79 22.36 0.20 -4.69 16 7 C -0.08 -2.58 9.69 22.26 0.22 -2.37 16 8 C -0.10 -3.59 5.13 -19.85 -0.10 -3.70 16 9 C -0.06 -2.51 5.28 29.85 0.16 -2.35 16 10 C 0.04 1.87 4.96 29.85 0.15 2.02 16 11 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 13 C 0.00 0.01 5.46 84.66 0.46 0.47 16 14 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 15 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.09 -2.97 9.48 22.27 0.21 -2.76 16 20 C -0.08 -2.42 6.33 22.41 0.14 -2.28 16 21 Cl -0.06 -1.85 28.50 -2.72 -0.08 -1.93 16 22 H 0.04 0.64 8.03 -2.39 -0.02 0.62 16 23 H 0.07 0.64 8.11 -2.38 -0.02 0.62 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.14 1.40 8.01 -2.39 -0.02 1.38 16 26 H 0.11 1.66 6.69 -2.39 -0.02 1.64 16 27 H 0.16 3.56 5.86 -2.91 -0.02 3.54 16 28 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 30 H 0.07 2.74 8.08 -2.39 -0.02 2.72 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -67.00 310.10 5.14 -61.86 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 1.09 Total: 5.52 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 3.77 Total: -36.76 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 0.28 Total: -56.82 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.96 Total: -17.99 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -67.00 5.14 -61.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060448.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.139 kcal (2) G-P(sol) polarization free energy of solvation -66.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds