Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86803 * 120.00204 * 2 1 4 4 H 1.48500 * 109.46999 * 83.28660 * 3 2 1 5 5 H 1.48497 * 109.47431 * 203.29077 * 3 2 1 6 6 H 1.48505 * 109.47091 * 323.29179 * 3 2 1 7 7 C 1.40309 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99806 * 15.55002 * 7 2 1 9 9 C 1.40538 * 119.99881 * 195.55488 * 7 2 1 10 10 C 1.44181 * 123.71640 * 24.46712 * 9 7 2 11 11 C 1.32766 * 114.43105 * 179.80002 * 10 9 7 12 12 S 1.75471 * 111.36155 * 0.45292 * 11 10 9 13 13 C 1.39550 * 123.71114 * 204.75621 * 9 7 2 14 14 C 1.46234 * 125.23004 * 0.02562 * 13 9 7 15 15 O 1.21761 * 119.99802 * 359.97438 * 14 13 9 16 16 N 1.34773 * 120.00188 * 179.97438 * 14 13 9 17 17 C 1.46498 * 120.00308 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47445 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47149 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47355 * 180.02562 * 19 18 17 21 21 N 1.46291 * 114.00432 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99615 * 173.16743 * 1 2 3 23 23 H 1.08001 * 122.78914 * 0.02562 * 10 9 7 24 24 H 1.08004 * 124.32340 * 180.19070 * 11 10 9 25 25 H 0.97003 * 119.99703 * 359.97438 * 16 14 13 26 26 H 1.08998 * 109.47229 * 300.00251 * 17 16 14 27 27 H 1.09004 * 109.47102 * 59.99947 * 17 16 14 28 28 H 1.08998 * 109.47312 * 300.00445 * 18 17 16 29 29 H 1.08998 * 109.46502 * 60.00274 * 18 17 16 30 30 H 1.08998 * 109.47358 * 300.00393 * 19 18 17 31 31 H 1.09004 * 109.47270 * 60.00271 * 19 18 17 32 32 H 1.00900 * 111.00355 * 179.97438 * 21 20 19 33 33 H 1.00904 * 111.00088 * 303.95321 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3463 2.1282 1.3905 5 1 3.6017 1.4035 -0.5536 6 1 1.5160 2.6077 -0.8369 7 6 2.0080 -1.2151 -0.0005 8 1 1.4977 -2.1331 -0.2517 9 6 3.3748 -1.2374 0.3258 10 6 4.0204 -0.2355 1.1370 11 6 5.3175 -0.4398 1.3331 12 16 5.8662 -1.8929 0.5167 13 6 4.2577 -2.2288 -0.1044 14 6 3.8992 -3.3711 -0.9441 15 8 2.7506 -3.5116 -1.3228 16 7 4.8402 -4.2685 -1.2987 17 6 4.4810 -5.4132 -2.1394 18 6 5.7232 -6.2696 -2.3929 19 6 5.3482 -7.4647 -3.2714 20 8 6.5083 -8.2650 -3.5077 21 7 6.2604 -9.4405 -4.3425 22 1 -0.4849 -0.8341 -0.0999 23 1 3.4920 0.6092 1.5538 24 1 5.9547 0.2081 1.9168 25 1 5.7553 -4.1564 -0.9972 26 1 3.7235 -6.0119 -1.6337 27 1 4.0863 -5.0557 -3.0905 28 1 6.4805 -5.6707 -2.8988 29 1 6.1183 -6.6270 -1.4420 30 1 4.5908 -8.0638 -2.7659 31 1 4.9533 -7.1069 -4.2224 32 1 7.1074 -9.9713 -4.4803 33 1 5.5322 -10.0170 -3.9481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263235434.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = -27.065329 kcal Electronic energy + Delta-G solvation = -17717.171973 eV Core-core repulsion = 14677.643946 eV Total energy + Delta-G solvation = -3039.528028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.52372 -37.31756 -36.33330 -34.57691 -33.37301 -31.79806 -29.59737 -28.96952 -26.60599 -24.57048 -21.92505 -21.55258 -20.43169 -19.17274 -17.84627 -17.01601 -16.49786 -16.34796 -15.92873 -15.08575 -14.83762 -14.46189 -14.33473 -13.60365 -13.52240 -13.19811 -12.85379 -12.28276 -11.98935 -11.88816 -11.77736 -11.47523 -11.29108 -11.21348 -10.82588 -10.61337 -10.09123 -9.99425 -9.61295 -9.31995 -9.25735 -8.53971 -8.33659 -7.82145 -7.56836 -7.27578 -4.63533 1.88261 2.52837 2.80877 2.96635 3.19024 3.33872 3.45116 3.53504 3.82777 4.05794 4.37007 4.79400 4.86964 5.10240 5.11110 5.22656 5.44864 5.56242 5.72704 5.74561 6.03058 6.14798 6.18016 6.50359 6.62996 6.84374 6.85190 7.07873 7.23755 7.32219 7.44581 8.09171 8.32917 8.48303 8.67979 9.49834 9.74724 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028869 B = 0.004219 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.649543 B = 6634.381956 C = 7418.369391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.034 3.966 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.282 1.282 7 C -0.426 4.426 8 H 0.109 0.891 9 C 0.113 3.887 10 C -0.162 4.162 11 C -0.176 4.176 12 S -0.022 6.022 13 C -0.432 4.432 14 C 0.599 3.401 15 O -0.561 6.561 16 N -0.751 5.751 17 C 0.134 3.866 18 C -0.126 4.126 19 C 0.066 3.934 20 O -0.243 6.243 21 N -0.676 5.676 22 H 0.295 0.705 23 H 0.126 0.874 24 H 0.146 0.854 25 H 0.390 0.610 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.365 0.635 33 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 -8.372 -2.174 13.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.190 4.190 3 Si 0.892 3.108 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.209 1.209 7 C -0.456 4.456 8 H 0.127 0.873 9 C 0.102 3.898 10 C -0.196 4.196 11 C -0.310 4.310 12 S 0.235 5.765 13 C -0.551 4.551 14 C 0.396 3.604 15 O -0.444 6.444 16 N -0.405 5.405 17 C 0.009 3.991 18 C -0.166 4.166 19 C -0.013 4.013 20 O -0.257 6.257 21 N -0.242 5.242 22 H 0.107 0.893 23 H 0.143 0.857 24 H 0.163 0.837 25 H 0.223 0.777 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.178 0.822 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.187 -7.071 -3.012 12.761 hybrid contribution -0.676 -1.721 1.106 2.155 sum 9.511 -8.793 -1.906 13.092 Atomic orbital electron populations 1.70402 1.08163 1.34210 1.27726 1.27664 0.95821 1.04876 0.90615 0.83779 0.76357 0.72729 0.77957 1.19966 1.17978 1.20887 1.21025 0.93309 0.97515 1.33761 0.87308 1.17923 0.93127 0.89102 0.89672 1.21419 0.94648 1.01030 1.02458 1.24931 0.98686 1.01664 1.05733 1.82781 1.14187 1.23937 1.55637 1.22465 0.93891 1.11566 1.27188 1.16780 0.83980 0.80662 0.78967 1.90680 1.19700 1.76290 1.57736 1.45771 1.12331 1.26640 1.55754 1.20878 0.95268 0.87456 0.95506 1.21676 0.99154 0.95458 1.00288 1.22364 0.88030 0.91603 0.99262 1.90656 1.31161 1.32706 1.71224 1.64361 1.13464 1.06682 1.39686 0.89288 0.85706 0.83664 0.77669 0.92200 0.91962 0.90332 0.90722 0.93005 0.91925 0.82171 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.49 13.64 55.57 0.76 -19.73 16 2 C 0.03 0.87 5.49 -17.28 -0.09 0.78 16 3 Si 1.07 22.66 24.85 -169.99 -4.22 18.43 16 4 H -0.27 -5.30 6.81 56.52 0.38 -4.92 16 5 H -0.26 -5.39 6.40 56.52 0.36 -5.02 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.43 -11.72 8.88 -37.94 -0.34 -12.06 16 8 H 0.11 3.31 6.28 -52.49 -0.33 2.98 16 9 C 0.11 2.90 5.30 -106.21 -0.56 2.34 16 10 C -0.16 -3.63 7.36 -39.12 -0.29 -3.92 16 11 C -0.18 -3.46 11.07 28.86 0.32 -3.15 16 12 S -0.02 -0.44 22.25 -107.50 -2.39 -2.83 16 13 C -0.43 -10.66 6.51 -35.88 -0.23 -10.89 16 14 C 0.60 14.65 7.76 -13.05 -0.10 14.54 16 15 O -0.56 -15.61 14.47 5.13 0.07 -15.54 16 16 N -0.75 -14.32 5.55 -61.75 -0.34 -14.67 16 17 C 0.13 2.12 5.67 -4.04 -0.02 2.09 16 18 C -0.13 -1.54 5.70 -26.73 -0.15 -1.70 16 19 C 0.07 0.74 6.39 37.15 0.24 0.98 16 20 O -0.24 -2.91 11.97 -13.92 -0.17 -3.07 16 21 N -0.68 -5.97 10.79 60.35 0.65 -5.32 16 22 H 0.29 7.62 8.73 -40.82 -0.36 7.27 16 23 H 0.13 2.61 4.45 -52.49 -0.23 2.37 16 24 H 0.15 2.29 8.06 -52.48 -0.42 1.87 16 25 H 0.39 6.67 7.55 -40.82 -0.31 6.36 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.36 2.36 9.25 -39.29 -0.36 1.99 16 33 H 0.34 2.26 9.18 -39.29 -0.36 1.90 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -31.16 296.31 -6.18 -37.33 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -3.76 Total: 11.91 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -1.24 Total: -10.98 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.07 Total: -39.72 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.09 Total: -18.61 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.22 Total: 18.43 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.39 Total: -2.83 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.16 -6.18 -37.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263235434.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.269 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds