Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 N 1.46498 * 109.46599 * 179.97438 * 15 13 12 17 17 C 1.34435 * 126.82552 * 125.00044 * 16 15 13 18 18 N 1.30824 * 108.07964 * 179.97438 * 17 16 15 19 19 C 1.33248 * 109.83148 * 359.97438 * 18 17 16 20 20 N 1.48015 * 125.52553 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00308 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99681 * 179.97438 * 20 19 18 23 23 N 1.30714 * 108.94456 * 359.71404 * 19 18 17 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 29 29 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 30 30 H 1.08001 * 125.95753 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 7 2.8581 0.4441 4.5906 17 6 2.3009 0.4282 5.8140 18 7 2.6662 1.5170 6.4407 19 6 3.4536 2.2490 5.6535 20 7 4.0631 3.5483 6.0157 21 8 3.8578 4.0322 7.1144 22 8 4.7700 4.1336 5.2149 23 7 3.6058 1.6305 4.5121 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.0104 -1.3370 3.8775 29 1 3.6884 -1.0397 3.3633 30 1 1.6637 -0.3483 6.2106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263290569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = 23.644097 kcal Electronic energy + Delta-G solvation = -20014.182662 eV Core-core repulsion = 16430.560345 eV Total energy + Delta-G solvation = -3583.622317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21935 -42.06669 -39.90255 -36.84944 -36.29568 -34.71179 -33.46493 -32.33250 -30.23589 -29.21038 -27.03279 -25.49127 -23.45960 -22.48474 -21.89162 -20.09063 -19.43752 -18.88476 -18.14146 -17.58563 -17.44202 -16.54514 -16.20053 -15.71698 -15.57327 -15.22279 -14.47652 -13.66699 -13.16982 -12.79275 -12.38724 -12.04205 -11.87458 -11.71583 -11.43434 -11.37603 -11.23483 -11.02162 -10.99116 -10.91813 -10.71593 -10.58229 -10.42904 -10.00892 -9.81073 -9.13552 -8.64515 -6.32898 -4.41671 -0.22272 0.29489 0.96974 1.59655 2.13377 2.43239 2.97850 3.17299 3.22247 3.25165 3.57978 3.91339 4.19247 4.45999 4.61087 4.71018 5.00213 5.14203 5.22181 5.79978 6.02174 6.38489 6.65722 6.66086 6.78792 6.85468 7.37732 7.51187 7.51405 7.68789 7.92697 8.23589 8.65477 9.24495 10.74396 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.003862 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.739750 B = 7248.123905 C = 7607.327762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.070 0.930 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.915 3.085 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.273 1.273 12 O -0.349 6.349 13 C 0.437 3.563 14 O -0.493 6.493 15 C 0.128 3.872 16 N -0.339 5.339 17 C 0.288 3.712 18 N -0.496 5.496 19 C 0.266 3.734 20 N 0.064 4.936 21 O -0.101 6.101 22 O -0.109 6.109 23 N -0.184 5.184 24 H 0.039 0.961 25 H 0.015 0.985 26 H 0.102 0.898 27 H 0.269 0.731 28 H 0.155 0.845 29 H 0.142 0.858 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 -5.508 14.627 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.167 3.833 3 H 0.067 0.933 4 C -0.565 4.565 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.742 3.258 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.199 1.199 12 O -0.264 6.264 13 C 0.277 3.723 14 O -0.381 6.381 15 C 0.006 3.994 16 N -0.135 5.135 17 C -0.008 4.008 18 N -0.226 5.226 19 C -0.094 4.094 20 N 0.596 4.404 21 O -0.323 6.323 22 O -0.328 6.328 23 N -0.023 5.023 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 1.666 -5.298 13.930 14.997 hybrid contribution 0.082 -0.262 -0.852 0.896 sum 1.749 -5.560 13.078 14.318 Atomic orbital electron populations 1.22187 0.97259 1.00271 1.01593 1.20788 0.91495 0.94065 0.76993 0.93311 1.20937 1.33169 1.13798 0.88634 0.91172 1.24901 0.94753 0.95037 0.99163 1.69876 1.35584 1.22346 1.24617 0.86276 0.79288 0.79459 0.80793 1.20915 1.19866 1.19858 1.86476 1.75669 1.43346 1.20948 1.22815 0.76612 0.86460 0.86448 1.90742 1.46966 1.16211 1.84148 1.21571 1.07156 0.86604 0.84084 1.50356 1.34384 1.15427 1.13304 1.26390 0.96215 0.96421 0.81751 1.69993 1.15862 1.04318 1.32437 1.23996 1.02182 0.92059 0.91160 1.41698 0.99311 0.98645 1.00785 1.94616 1.63949 1.65927 1.07810 1.94680 1.32498 1.58565 1.47037 1.78432 1.12995 0.94528 1.16320 0.94181 0.96637 0.87961 0.92102 0.82754 0.84082 0.73574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 9.33 37.16 0.35 -3.31 16 2 C 0.22 5.45 2.56 -27.89 -0.07 5.37 16 3 H 0.05 1.38 7.16 -51.92 -0.37 1.01 16 4 C -0.53 -13.94 8.90 -34.44 -0.31 -14.25 16 5 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.71 16 8 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 O -0.35 -7.10 9.86 -39.27 -0.39 -7.49 16 13 C 0.44 7.55 7.97 36.01 0.29 7.84 16 14 O -0.49 -10.73 14.98 -18.75 -0.28 -11.01 16 15 C 0.13 1.21 7.14 -5.19 -0.04 1.18 16 16 N -0.34 -3.91 3.40 -63.81 -0.22 -4.13 16 17 C 0.29 2.51 12.63 -90.66 -1.14 1.36 16 18 N -0.50 -6.46 11.15 -12.81 -0.14 -6.60 16 19 C 0.27 4.15 9.01 -308.64 -2.78 1.37 16 20 N 0.06 1.03 4.45 31.81 0.14 1.18 16 21 O -0.10 -1.56 19.23 -29.46 -0.57 -2.13 16 22 O -0.11 -1.82 19.22 -29.46 -0.57 -2.39 16 23 N -0.18 -2.96 11.80 31.75 0.37 -2.58 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.10 2.63 6.07 -51.93 -0.32 2.32 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.15 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.25 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 289.02 15.07 4.36 4.36 Total: -1.00 -34.66 289.02 -7.83 -42.49 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: -2.34 Total: -4.33 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.80 Total: 1.17 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.78 Total: -35.84 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.80 Total: -23.01 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.66 -7.83 -42.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263290569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.131 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds