Wall clock time and date at job start Mon Mar 30 2020 01:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 N 1.46498 * 109.46599 * 179.97438 * 15 13 12 17 17 C 1.34435 * 126.82552 * 125.00044 * 16 15 13 18 18 N 1.30824 * 108.07964 * 179.97438 * 17 16 15 19 19 C 1.33248 * 109.83148 * 359.97438 * 18 17 16 20 20 N 1.48015 * 125.52553 * 180.02562 * 19 18 17 21 21 O 1.21801 * 120.00308 * 359.97438 * 20 19 18 22 22 O 1.21802 * 119.99681 * 179.97438 * 20 19 18 23 23 N 1.30714 * 108.94456 * 359.71404 * 19 18 17 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47055 * 299.98976 * 15 13 12 29 29 H 1.08998 * 109.47424 * 60.00159 * 15 13 12 30 30 H 1.08001 * 125.95753 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 7 2.8581 0.4441 4.5906 17 6 2.3009 0.4282 5.8140 18 7 2.6662 1.5170 6.4407 19 6 3.4536 2.2490 5.6535 20 7 4.0631 3.5483 6.0157 21 8 3.8578 4.0322 7.1144 22 8 4.7700 4.1336 5.2149 23 7 3.6058 1.6305 4.5121 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7088 1.1611 -3.4845 28 1 2.0104 -1.3370 3.8775 29 1 3.6884 -1.0397 3.3633 30 1 1.6637 -0.3483 6.2106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263290569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:58 Heat of formation + Delta-G solvation = 3.018468 kcal Electronic energy + Delta-G solvation = -20015.077056 eV Core-core repulsion = 16430.560345 eV Total energy + Delta-G solvation = -3584.516711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.084 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.20159 -43.23119 -41.40296 -38.07790 -37.87717 -35.74648 -35.37642 -33.30090 -31.94241 -30.46152 -28.17049 -27.48407 -24.58062 -23.57023 -23.30594 -21.64865 -20.49642 -20.09452 -19.35229 -19.07910 -18.76715 -17.99811 -17.45441 -17.17181 -16.75739 -16.36839 -15.98812 -14.87804 -14.69980 -14.19307 -13.95936 -13.49633 -13.22798 -13.12355 -13.03776 -12.91483 -12.84001 -12.63428 -12.42893 -12.21491 -12.04394 -11.91716 -11.69664 -11.67064 -11.33441 -11.05598 -10.63099 -8.32211 -6.49753 -1.41175 -0.77296 0.06977 0.75474 1.10757 1.16615 1.41945 1.44935 1.53114 1.79127 2.36200 2.71518 2.99663 3.26538 3.58340 3.82076 3.88431 4.02885 4.34872 4.47260 4.71409 4.76440 4.78739 5.06596 5.18863 5.44749 5.57871 5.79436 5.86484 5.99559 6.38205 6.53859 6.77587 7.22202 8.74949 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033336 B = 0.003862 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.739750 B = 7248.123905 C = 7607.327762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.221 3.779 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.982 3.018 9 H -0.282 1.282 10 H -0.269 1.269 11 H -0.259 1.259 12 O -0.349 6.349 13 C 0.428 3.572 14 O -0.545 6.545 15 C 0.143 3.857 16 N -0.342 5.342 17 C 0.323 3.677 18 N -0.521 5.521 19 C 0.255 3.745 20 N 0.061 4.939 21 O -0.084 6.084 22 O -0.152 6.152 23 N -0.236 5.236 24 H 0.054 0.946 25 H 0.023 0.977 26 H 0.076 0.924 27 H 0.270 0.730 28 H 0.228 0.772 29 H 0.172 0.828 30 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 -8.788 15.841 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.805 3.195 9 H -0.207 1.207 10 H -0.194 1.194 11 H -0.183 1.183 12 O -0.264 6.264 13 C 0.271 3.729 14 O -0.436 6.436 15 C 0.023 3.977 16 N -0.138 5.138 17 C 0.029 3.971 18 N -0.253 5.253 19 C -0.105 4.105 20 N 0.590 4.410 21 O -0.313 6.313 22 O -0.361 6.361 23 N -0.076 5.076 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.244 0.756 29 H 0.190 0.810 30 H 0.335 0.665 Dipole moment (debyes) X Y Z Total from point charges 1.200 -8.581 15.100 17.409 hybrid contribution 0.176 0.713 -1.083 1.308 sum 1.377 -7.868 14.017 16.133 Atomic orbital electron populations 1.21977 0.96426 1.00834 1.00707 1.20341 0.92114 0.91793 0.78931 0.98129 1.21295 1.33549 1.14106 0.89677 0.90701 1.25845 0.94678 0.95596 1.02316 1.70019 1.36598 1.23737 1.25308 0.85235 0.78738 0.78792 0.76698 1.20736 1.19420 1.18343 1.86436 1.76014 1.43011 1.20958 1.24364 0.74908 0.86075 0.87559 1.90740 1.49102 1.18738 1.84992 1.22105 1.10189 0.85763 0.79639 1.50520 1.34069 1.14464 1.14700 1.27859 0.93736 0.95680 0.79784 1.70010 1.16433 1.05628 1.33200 1.23890 1.03097 0.91642 0.91832 1.41866 0.99221 0.99325 1.00630 1.94569 1.62951 1.66151 1.07624 1.94677 1.34231 1.59804 1.47382 1.78317 1.15183 0.96925 1.17170 0.92665 0.95803 0.90561 0.92064 0.75553 0.81029 0.66520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 9.33 71.98 0.67 -6.05 16 2 C 0.22 11.24 2.56 29.85 0.08 11.32 16 3 H 0.00 0.05 7.16 -2.38 -0.02 0.04 16 4 C -0.55 -29.14 8.90 25.60 0.23 -28.92 16 5 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 6 C 0.02 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -51.55 11.32 21.45 0.24 -51.31 16 8 Si 0.98 41.03 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 11 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 12 O -0.35 -13.82 9.86 -51.45 -0.51 -14.33 16 13 C 0.43 14.14 7.97 71.24 0.57 14.70 16 14 O -0.55 -24.10 14.98 21.98 0.33 -23.77 16 15 C 0.14 2.03 7.14 85.64 0.61 2.64 16 16 N -0.34 -6.68 3.40 -355.81 -1.21 -7.89 16 17 C 0.32 4.03 12.63 180.36 2.28 6.30 16 18 N -0.52 -12.26 11.15 -194.44 -2.17 -14.43 16 19 C 0.26 7.88 9.01 256.53 2.31 10.19 16 20 N 0.06 2.04 4.45 -53.27 -0.24 1.80 16 21 O -0.08 -2.64 19.23 18.88 0.36 -2.28 16 22 O -0.15 -5.44 19.22 18.88 0.36 -5.08 16 23 N -0.24 -7.47 11.80 -53.47 -0.63 -8.10 16 24 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 4.03 6.07 -2.39 -0.01 4.01 16 27 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.23 -0.04 8.09 -2.39 -0.02 -0.06 16 29 H 0.17 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.32 -1.42 8.06 -2.91 -0.02 -1.45 16 Total: -1.00 -83.71 289.02 6.96 -76.75 By element: Atomic # 1 Polarization: -7.07 SS G_CDS: 1.19 Total: -5.88 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 7.19 Total: 11.45 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -4.00 Total: -79.93 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: 0.55 Total: -45.45 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -83.71 6.96 -76.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263290569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.771 kcal (2) G-P(sol) polarization free energy of solvation -83.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds