Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46962 * 138.45857 * 3 2 1 5 5 C 1.36914 * 119.99795 * 274.54679 * 4 3 2 6 6 H 1.07995 * 120.00059 * 176.85894 * 5 4 3 7 7 C 1.38950 * 119.99551 * 356.85785 * 5 4 3 8 8 N 1.31432 * 120.00426 * 20.68789 * 7 5 4 9 9 Si 1.86809 * 119.99426 * 200.68252 * 7 5 4 10 10 H 1.48493 * 109.47399 * 60.00401 * 9 7 5 11 11 H 1.48501 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47026 * 300.00151 * 9 7 5 13 13 C 1.34768 * 120.00225 * 94.54892 * 4 3 2 14 14 O 1.21843 * 120.00329 * 186.45741 * 13 4 3 15 15 C 1.41555 * 120.00195 * 6.18676 * 13 4 3 16 16 C 1.39287 * 125.87757 * 335.42885 * 15 13 4 17 17 C 1.38037 * 107.68052 * 179.83774 * 16 15 13 18 18 C 1.39581 * 107.58588 * 0.42287 * 17 16 15 19 19 C 1.40563 * 132.41142 * 179.78557 * 18 17 16 20 20 C 1.36338 * 119.16130 * 179.97438 * 19 18 17 21 21 C 1.39959 * 120.03721 * 0.02562 * 20 19 18 22 22 N 1.30648 * 120.98660 * 359.97438 * 21 20 19 23 23 N 1.37174 * 108.20311 * 359.73166 * 18 17 16 24 24 H 1.09001 * 109.47180 * 18.45354 * 3 2 1 25 25 H 1.09004 * 109.46754 * 258.45638 * 3 2 1 26 26 H 0.97001 * 119.99730 * 179.97438 * 8 7 5 27 27 H 1.08000 * 126.16113 * 359.97438 * 16 15 13 28 28 H 1.07999 * 126.20708 * 180.15678 * 17 16 15 29 29 H 1.08003 * 120.42153 * 359.97438 * 19 18 17 30 30 H 1.08000 * 119.97899 * 180.02562 * 20 19 18 31 31 H 1.08003 * 119.50250 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.0347 -0.9160 5 6 3.2355 0.7574 -2.2494 6 1 3.5465 1.5337 -2.9327 7 6 2.9771 -0.5229 -2.7235 8 7 2.2306 -1.3456 -2.0211 9 14 3.6907 -1.0748 -4.3593 10 1 5.1729 -1.0061 -4.3012 11 1 3.2700 -2.4716 -4.6369 12 1 3.1960 -0.1851 -5.4405 13 6 3.4072 2.2588 -0.4461 14 8 3.6997 3.1526 -1.2208 15 6 3.3888 2.5079 0.9473 16 6 2.6455 1.8049 1.8925 17 6 2.9112 2.3566 3.1296 18 6 3.8118 3.4057 2.9388 19 6 4.4179 4.3087 3.8294 20 6 5.2763 5.2485 3.3409 21 6 5.5444 5.3066 1.9685 22 7 4.9831 4.4692 1.1375 23 7 4.0964 3.4881 1.5994 24 1 2.9718 -0.9740 -0.3253 25 1 2.9712 0.2065 1.0069 26 1 2.0500 -2.2393 -2.3523 27 1 1.9825 0.9759 1.6936 28 1 2.4942 2.0374 4.0733 29 1 4.2063 4.2586 4.8873 30 1 5.7496 5.9486 4.0135 31 1 6.2261 6.0544 1.5909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292651009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 150.270590 kcal Electronic energy + Delta-G solvation = -19943.339404 eV Core-core repulsion = 16808.350039 eV Total energy + Delta-G solvation = -3134.989366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68765 -38.89949 -36.81321 -35.89563 -34.38950 -33.01329 -32.10479 -30.21105 -28.65979 -27.53277 -25.43727 -24.05283 -22.55034 -20.95505 -20.00725 -18.08812 -17.37989 -16.95456 -16.26245 -15.95627 -15.46417 -15.16556 -14.73694 -14.23474 -14.00521 -13.56152 -13.35101 -13.22822 -12.51835 -12.20077 -12.07969 -11.81602 -11.68762 -11.49275 -11.31558 -11.23047 -10.59826 -10.53556 -10.45237 -10.25250 -10.15906 -9.22233 -8.72684 -8.56099 -8.19071 -7.44646 -6.54773 -3.96894 0.66214 1.32213 2.20985 2.66203 3.15334 3.19125 3.22926 3.42312 3.64087 3.86195 4.03814 4.19085 4.42838 4.61327 4.74871 4.84438 4.95961 5.04760 5.32758 5.41388 5.54830 5.61284 5.80331 5.86749 6.06814 6.21282 6.27528 6.41145 6.83695 6.87146 7.04433 7.40059 7.79577 7.94610 8.25916 8.70026 8.93890 9.11798 9.70158 10.42718 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.006135 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.353162 B = 4562.945656 C = 5368.593612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.249 3.751 3 C 0.170 3.830 4 N -0.422 5.422 5 C -0.295 4.295 6 H 0.115 0.885 7 C 0.030 3.970 8 N -0.875 5.875 9 Si 0.936 3.064 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.272 1.272 13 C 0.500 3.500 14 O -0.568 6.568 15 C 0.035 3.965 16 C -0.157 4.157 17 C -0.161 4.161 18 C -0.028 4.028 19 C -0.011 4.011 20 C -0.215 4.215 21 C 0.115 3.885 22 N -0.239 5.239 23 N -0.225 5.225 24 H 0.157 0.843 25 H 0.108 0.892 26 H 0.276 0.724 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 5.030 12.795 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.069 4.069 3 C 0.044 3.956 4 N -0.141 5.141 5 C -0.423 4.423 6 H 0.133 0.867 7 C -0.173 4.173 8 N -0.516 5.516 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.291 3.709 14 O -0.452 6.452 15 C -0.085 4.085 16 C -0.181 4.181 17 C -0.187 4.187 18 C -0.137 4.137 19 C -0.037 4.037 20 C -0.237 4.237 21 C -0.079 4.079 22 N -0.046 5.046 23 N 0.013 4.987 24 H 0.174 0.826 25 H 0.125 0.875 26 H 0.087 0.913 27 H 0.188 0.812 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.271 5.244 11.141 13.394 hybrid contribution 0.559 -0.198 0.080 0.598 sum 5.830 5.046 11.221 13.614 Atomic orbital electron populations 1.80924 1.13554 1.10238 1.10689 1.29327 0.95312 0.91336 0.90928 1.20292 0.81522 0.98529 0.95276 1.43477 1.54494 1.08185 1.07992 1.19875 1.42768 0.96444 0.83185 0.86703 1.25329 0.95581 0.95783 1.00615 1.69890 1.33073 1.09107 1.39517 0.85823 0.79652 0.77630 0.80713 1.19536 1.20736 1.19698 1.15378 0.86623 0.83487 0.85436 1.90750 1.54020 1.42511 1.57930 1.19431 1.01108 0.92959 0.94965 1.22028 1.02508 1.01907 0.91627 1.20994 1.01530 0.97319 0.98857 1.19315 1.06523 1.03423 0.84465 1.20799 0.92237 0.91003 0.99674 1.21316 1.03571 1.02784 0.96071 1.24023 0.96252 0.95835 0.91777 1.76104 1.03503 0.99378 1.25639 1.45393 1.27571 1.20148 1.05623 0.82640 0.87534 0.91290 0.81242 0.83105 0.83328 0.83928 0.79407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.35 18.54 42.15 0.78 -10.57 16 2 C 0.25 5.62 12.24 -20.76 -0.25 5.36 16 3 C 0.17 3.58 4.75 -6.83 -0.03 3.54 16 4 N -0.42 -10.44 2.59 -121.20 -0.31 -10.76 16 5 C -0.30 -7.79 9.47 -15.02 -0.14 -7.94 16 6 H 0.12 3.20 7.25 -52.49 -0.38 2.82 16 7 C 0.03 0.73 5.20 -17.46 -0.09 0.64 16 8 N -0.88 -21.31 8.74 55.50 0.49 -20.82 16 9 Si 0.94 19.67 29.60 -169.99 -5.03 14.64 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.50 12.66 7.40 -15.00 -0.11 12.55 16 14 O -0.57 -16.34 16.36 5.06 0.08 -16.25 16 15 C 0.04 0.75 6.53 -83.74 -0.55 0.21 16 16 C -0.16 -2.79 8.29 -39.27 -0.33 -3.11 16 17 C -0.16 -2.38 10.92 -39.15 -0.43 -2.81 16 18 C -0.03 -0.43 6.80 -84.10 -0.57 -1.01 16 19 C -0.01 -0.12 10.11 -39.39 -0.40 -0.52 16 20 C -0.21 -2.18 10.04 -39.62 -0.40 -2.58 16 21 C 0.11 1.46 11.29 -17.41 -0.20 1.26 16 22 N -0.24 -4.49 11.60 30.61 0.36 -4.13 16 23 N -0.22 -4.44 4.02 -8.27 -0.03 -4.47 16 24 H 0.16 3.34 5.61 -51.93 -0.29 3.05 16 25 H 0.11 1.89 4.07 -51.93 -0.21 1.67 16 26 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 27 H 0.17 2.91 3.88 -52.49 -0.20 2.70 16 28 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.19 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -33.93 277.15 -4.91 -38.83 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -1.91 Total: 3.77 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -3.49 Total: 5.59 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 1.27 Total: -50.75 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.08 Total: -16.25 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.93 -4.91 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292651009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.102 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds