Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46962 * 138.45857 * 3 2 1 5 5 C 1.36914 * 119.99795 * 274.54679 * 4 3 2 6 6 H 1.07995 * 120.00059 * 176.85894 * 5 4 3 7 7 C 1.38950 * 119.99551 * 356.85785 * 5 4 3 8 8 N 1.31432 * 120.00426 * 20.68789 * 7 5 4 9 9 Si 1.86809 * 119.99426 * 200.68252 * 7 5 4 10 10 H 1.48493 * 109.47399 * 60.00401 * 9 7 5 11 11 H 1.48501 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47026 * 300.00151 * 9 7 5 13 13 C 1.34768 * 120.00225 * 94.54892 * 4 3 2 14 14 O 1.21843 * 120.00329 * 186.45741 * 13 4 3 15 15 C 1.41555 * 120.00195 * 6.18676 * 13 4 3 16 16 C 1.39287 * 125.87757 * 335.42885 * 15 13 4 17 17 C 1.38037 * 107.68052 * 179.83774 * 16 15 13 18 18 C 1.39581 * 107.58588 * 0.42287 * 17 16 15 19 19 C 1.40563 * 132.41142 * 179.78557 * 18 17 16 20 20 C 1.36338 * 119.16130 * 179.97438 * 19 18 17 21 21 C 1.39959 * 120.03721 * 0.02562 * 20 19 18 22 22 N 1.30648 * 120.98660 * 359.97438 * 21 20 19 23 23 N 1.37174 * 108.20311 * 359.73166 * 18 17 16 24 24 H 1.09001 * 109.47180 * 18.45354 * 3 2 1 25 25 H 1.09004 * 109.46754 * 258.45638 * 3 2 1 26 26 H 0.97001 * 119.99730 * 179.97438 * 8 7 5 27 27 H 1.08000 * 126.16113 * 359.97438 * 16 15 13 28 28 H 1.07999 * 126.20708 * 180.15678 * 17 16 15 29 29 H 1.08003 * 120.42153 * 359.97438 * 19 18 17 30 30 H 1.08000 * 119.97899 * 180.02562 * 20 19 18 31 31 H 1.08003 * 119.50250 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0959 1.0347 -0.9160 5 6 3.2355 0.7574 -2.2494 6 1 3.5465 1.5337 -2.9327 7 6 2.9771 -0.5229 -2.7235 8 7 2.2306 -1.3456 -2.0211 9 14 3.6907 -1.0748 -4.3593 10 1 5.1729 -1.0061 -4.3012 11 1 3.2700 -2.4716 -4.6369 12 1 3.1960 -0.1851 -5.4405 13 6 3.4072 2.2588 -0.4461 14 8 3.6997 3.1526 -1.2208 15 6 3.3888 2.5079 0.9473 16 6 2.6455 1.8049 1.8925 17 6 2.9112 2.3566 3.1296 18 6 3.8118 3.4057 2.9388 19 6 4.4179 4.3087 3.8294 20 6 5.2763 5.2485 3.3409 21 6 5.5444 5.3066 1.9685 22 7 4.9831 4.4692 1.1375 23 7 4.0964 3.4881 1.5994 24 1 2.9718 -0.9740 -0.3253 25 1 2.9712 0.2065 1.0069 26 1 2.0500 -2.2393 -2.3523 27 1 1.9825 0.9759 1.6936 28 1 2.4942 2.0374 4.0733 29 1 4.2063 4.2586 4.8873 30 1 5.7496 5.9486 4.0135 31 1 6.2261 6.0544 1.5909 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292651009.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 126.704178 kcal Electronic energy + Delta-G solvation = -19944.361321 eV Core-core repulsion = 16808.350039 eV Total energy + Delta-G solvation = -3136.011282 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96221 -40.58422 -38.05192 -37.76620 -36.27845 -34.10457 -33.95064 -31.54983 -29.99998 -29.23687 -27.07879 -25.36274 -23.86615 -22.21784 -21.51101 -19.96696 -18.83119 -18.16641 -17.95428 -17.41678 -16.65693 -16.60461 -16.22998 -15.91597 -15.49552 -15.31375 -14.94258 -14.25246 -13.90858 -13.78781 -13.60006 -13.48870 -13.15684 -13.12537 -12.95309 -12.92672 -12.36390 -12.12055 -11.88963 -11.62674 -11.30988 -11.11386 -10.63023 -10.14115 -9.85524 -8.69683 -8.42562 -5.95294 -0.31376 0.08695 0.99283 1.30191 1.44710 1.49974 1.55210 1.84541 2.05185 2.28272 2.37785 2.49075 2.89621 3.09250 3.57023 3.59274 3.69822 3.87459 4.03923 4.05106 4.40209 4.49411 4.55709 4.75470 4.91219 5.06428 5.09432 5.16864 5.31285 5.42732 5.72630 5.79597 5.94052 6.37369 6.78350 6.87553 7.01752 7.23656 7.83219 8.52912 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.006135 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.353162 B = 4562.945656 C = 5368.593612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.260 3.740 3 C 0.178 3.822 4 N -0.435 5.435 5 C -0.340 4.340 6 H 0.083 0.917 7 C 0.008 3.992 8 N -0.884 5.884 9 Si 0.995 3.005 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.281 1.281 13 C 0.497 3.503 14 O -0.624 6.624 15 C -0.037 4.037 16 C -0.149 4.149 17 C -0.158 4.158 18 C -0.020 4.020 19 C -0.016 4.016 20 C -0.189 4.189 21 C 0.125 3.875 22 N -0.318 5.318 23 N -0.238 5.238 24 H 0.154 0.846 25 H 0.143 0.857 26 H 0.282 0.718 27 H 0.170 0.830 28 H 0.197 0.803 29 H 0.201 0.799 30 H 0.199 0.801 31 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.838 5.766 16.416 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.057 4.057 3 C 0.052 3.948 4 N -0.153 5.153 5 C -0.467 4.467 6 H 0.101 0.899 7 C -0.194 4.194 8 N -0.523 5.523 9 Si 0.818 3.182 10 H -0.192 1.192 11 H -0.190 1.190 12 H -0.207 1.207 13 C 0.290 3.710 14 O -0.511 6.511 15 C -0.155 4.155 16 C -0.174 4.174 17 C -0.182 4.182 18 C -0.131 4.131 19 C -0.042 4.042 20 C -0.212 4.212 21 C -0.066 4.066 22 N -0.127 5.127 23 N 0.000 5.000 24 H 0.170 0.830 25 H 0.159 0.841 26 H 0.093 0.907 27 H 0.187 0.813 28 H 0.214 0.786 29 H 0.218 0.782 30 H 0.216 0.784 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.389 5.939 14.776 17.159 hybrid contribution 0.348 -0.143 -0.807 0.891 sum 6.736 5.796 13.969 16.556 Atomic orbital electron populations 1.80906 1.14279 1.11183 1.11713 1.29620 0.95563 0.90447 0.90041 1.20439 0.80493 0.97391 0.96451 1.43557 1.54973 1.08877 1.07930 1.19708 1.45928 0.96862 0.84168 0.89929 1.25956 0.95000 0.94965 1.03478 1.69952 1.32579 1.09253 1.40499 0.84974 0.78972 0.77495 0.76745 1.19153 1.19004 1.20659 1.16016 0.84951 0.82867 0.87130 1.90666 1.56350 1.44212 1.59907 1.19006 1.05962 0.96883 0.93633 1.22018 1.01557 1.01486 0.92334 1.21460 1.01027 0.96563 0.99194 1.20233 1.05534 1.03692 0.83671 1.21494 0.91571 0.89734 1.01405 1.21984 1.01629 1.02300 0.95271 1.24985 0.94358 0.94139 0.93136 1.76100 1.06132 1.01605 1.28891 1.45495 1.27665 1.19936 1.06885 0.82959 0.84066 0.90746 0.81295 0.78578 0.78191 0.78374 0.75578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -24.39 18.54 20.01 0.37 -24.02 16 2 C 0.26 12.05 12.24 89.44 1.09 13.14 16 3 C 0.18 7.72 4.75 84.58 0.40 8.12 16 4 N -0.44 -22.88 2.59 -655.52 -1.70 -24.57 16 5 C -0.34 -19.13 9.47 84.07 0.80 -18.33 16 6 H 0.08 5.06 7.25 -2.91 -0.02 5.03 16 7 C 0.01 0.40 5.20 84.92 0.44 0.84 16 8 N -0.88 -43.72 8.74 21.67 0.19 -43.53 16 9 Si 1.00 41.37 29.60 68.60 2.03 43.40 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.50 27.02 7.40 85.06 0.63 27.65 16 14 O -0.62 -38.98 16.36 -4.81 -0.08 -39.06 16 15 C -0.04 -1.66 6.53 39.35 0.26 -1.40 16 16 C -0.15 -5.28 8.29 22.47 0.19 -5.09 16 17 C -0.16 -4.22 10.92 22.55 0.25 -3.98 16 18 C -0.02 -0.56 6.80 39.20 0.27 -0.29 16 19 C -0.02 -0.27 10.11 22.39 0.23 -0.05 16 20 C -0.19 -2.74 10.04 22.24 0.22 -2.52 16 21 C 0.13 2.80 11.29 85.29 0.96 3.76 16 22 N -0.32 -11.98 11.60 -57.06 -0.66 -12.64 16 23 N -0.24 -9.43 4.02 -180.09 -0.72 -10.15 16 24 H 0.15 6.72 5.61 -2.39 -0.01 6.71 16 25 H 0.14 5.11 4.07 -2.39 -0.01 5.10 16 26 H 0.28 13.09 8.31 -92.71 -0.77 12.32 16 27 H 0.17 5.80 3.88 -2.91 -0.01 5.79 16 28 H 0.20 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 31 H 0.23 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -82.97 277.15 6.36 -76.61 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 1.20 Total: 12.11 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 5.73 Total: 21.85 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -2.52 Total: -114.91 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.08 Total: -39.06 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -82.97 6.36 -76.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292651009.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.311 kcal (2) G-P(sol) polarization free energy of solvation -82.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds