Wall clock time and date at job start Mon Mar 30 2020 02:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47563 * 322.36554 * 3 2 1 5 5 C 1.36809 * 119.99910 * 264.44012 * 4 3 2 6 6 H 1.07999 * 120.00596 * 131.88730 * 5 4 3 7 7 C 1.39025 * 119.99746 * 311.87818 * 5 4 3 8 8 N 1.31381 * 120.00069 * 3.33335 * 7 5 4 9 9 Si 1.86798 * 120.00181 * 183.32789 * 7 5 4 10 10 H 1.48501 * 109.47215 * 90.00440 * 9 7 5 11 11 H 1.48500 * 109.47493 * 209.99966 * 9 7 5 12 12 H 1.48500 * 109.47139 * 330.00685 * 9 7 5 13 13 C 1.34774 * 120.00476 * 84.42869 * 4 3 2 14 14 O 1.21718 * 119.99780 * 4.78463 * 13 4 3 15 15 C 1.47086 * 120.00477 * 184.78058 * 13 4 3 16 16 C 1.38628 * 120.04471 * 174.13191 * 15 13 4 17 17 C 1.40567 * 118.26179 * 179.97438 * 16 15 13 18 18 C 1.38354 * 133.39390 * 180.02562 * 17 16 15 19 19 C 1.39647 * 106.99941 * 179.97438 * 18 17 16 20 20 C 1.35668 * 108.09080 * 359.97438 * 19 18 17 21 21 N 1.35965 * 109.06591 * 0.02562 * 20 19 18 22 22 C 1.36902 * 132.41354 * 180.02562 * 21 20 19 23 23 N 1.29796 * 121.49771 * 179.73031 * 22 21 20 24 24 H 1.09003 * 109.47377 * 202.36098 * 3 2 1 25 25 H 1.09005 * 109.46977 * 82.36716 * 3 2 1 26 26 H 0.96996 * 120.00232 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.87185 * 0.02562 * 16 15 13 28 28 H 1.08006 * 126.49729 * 359.95631 * 18 17 16 29 29 H 1.07991 * 125.95662 * 180.02562 * 19 18 17 30 30 H 1.07993 * 125.46932 * 180.02562 * 20 19 18 31 31 H 1.07999 * 119.24823 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.0929 0.8433 5 6 3.4330 -0.8530 2.1476 6 1 3.0645 -1.5018 2.9284 7 6 4.2493 0.2258 2.4679 8 7 4.6442 1.0530 1.5267 9 14 4.7843 0.4995 4.2366 10 1 6.0595 -0.2198 4.4850 11 1 4.9809 1.9520 4.4753 12 1 3.7381 -0.0161 5.1557 13 6 3.2153 -2.3352 0.3345 14 8 2.9997 -2.5320 -0.8472 15 6 3.6051 -3.4534 1.2070 16 6 3.6094 -4.7492 0.7145 17 6 3.9888 -5.7892 1.5808 18 6 4.1034 -7.1595 1.4278 19 6 4.5293 -7.6730 2.6546 20 6 4.6668 -6.6372 3.5200 21 7 4.3416 -5.4806 2.8836 22 6 4.3131 -4.1757 3.2969 23 7 3.9664 -3.2173 2.4932 24 1 2.9709 0.9512 0.3910 25 1 2.9713 -0.1357 -1.0186 26 1 5.2133 1.8060 1.7502 27 1 3.3293 -4.9543 -0.3081 28 1 3.9015 -7.7248 0.5300 29 1 4.7172 -8.7132 2.8758 30 1 4.9838 -6.7184 4.5492 31 1 4.5891 -3.9381 4.3136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292651280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:00 Heat of formation + Delta-G solvation = 104.402940 kcal Electronic energy + Delta-G solvation = -19767.217386 eV Core-core repulsion = 16630.239050 eV Total energy + Delta-G solvation = -3136.978336 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05530 -39.08155 -36.94294 -35.81173 -34.76819 -32.74635 -31.70270 -30.66436 -28.62664 -27.24212 -24.95699 -23.92259 -22.65337 -20.96152 -19.80702 -18.39176 -18.03273 -16.86976 -15.96674 -15.53608 -15.47154 -15.02998 -14.81523 -14.44454 -14.04554 -13.80492 -13.47196 -12.91042 -12.41836 -12.38750 -12.27425 -12.10937 -11.95721 -11.70479 -11.32955 -11.26345 -11.03175 -10.51832 -10.41709 -10.24380 -9.67156 -9.29313 -8.76493 -8.69827 -7.76458 -7.19883 -6.49118 -4.25358 0.81098 1.54910 2.81879 3.03464 3.08141 3.15907 3.18992 3.28233 3.43182 3.63228 4.05307 4.29793 4.34119 4.56333 4.78151 4.87668 5.02586 5.23042 5.29801 5.36763 5.66415 5.74980 5.86568 6.05904 6.27369 6.34931 6.54207 6.81746 6.86851 6.91149 7.33378 7.49945 7.64637 8.11979 8.33241 8.38792 8.92524 9.13264 9.58695 10.55267 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.007292 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.681031 B = 3838.715130 C = 5030.778021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.217 3.783 3 C 0.191 3.809 4 N -0.416 5.416 5 C -0.305 4.305 6 H 0.115 0.885 7 C 0.043 3.957 8 N -0.879 5.879 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.530 3.470 14 O -0.588 6.588 15 C 0.061 3.939 16 C -0.078 4.078 17 C 0.045 3.955 18 C -0.199 4.199 19 C -0.148 4.148 20 C -0.050 4.050 21 N -0.383 5.383 22 C 0.274 3.726 23 N -0.405 5.405 24 H 0.160 0.840 25 H 0.103 0.897 26 H 0.274 0.726 27 H 0.157 0.843 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -10.059 5.311 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.100 4.100 3 C 0.065 3.935 4 N -0.134 5.134 5 C -0.434 4.434 6 H 0.132 0.868 7 C -0.161 4.161 8 N -0.517 5.517 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.319 3.681 14 O -0.473 6.473 15 C -0.058 4.058 16 C -0.100 4.100 17 C -0.062 4.062 18 C -0.224 4.224 19 C -0.171 4.171 20 C -0.181 4.181 21 N -0.056 5.056 22 C -0.007 4.007 23 N -0.116 5.116 24 H 0.176 0.824 25 H 0.120 0.880 26 H 0.085 0.915 27 H 0.174 0.826 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.188 -8.742 4.950 10.282 hybrid contribution 0.905 -0.582 0.763 1.319 sum 3.093 -9.324 5.713 11.364 Atomic orbital electron populations 1.80975 1.13743 1.10158 1.10556 1.30593 0.96319 0.91748 0.91383 1.19392 0.78392 0.97613 0.98133 1.43159 1.53760 1.04885 1.11556 1.19968 1.27708 1.13270 0.82441 0.86818 1.25573 0.94909 0.96044 0.99589 1.69524 1.34092 1.15009 1.33113 0.85908 0.79284 0.77368 0.82006 1.20115 1.21043 1.19273 1.17748 0.81040 0.83421 0.85865 1.90714 1.56563 1.84512 1.15477 1.20995 1.01225 0.93105 0.90484 1.21625 0.97969 0.89944 1.00495 1.18929 1.07385 0.95143 0.84749 1.20992 1.10990 0.90794 0.99606 1.20901 1.04497 0.98466 0.93242 1.21835 1.13162 0.83217 0.99886 1.43417 1.43350 1.07495 1.11303 1.25451 0.97668 0.76534 1.01058 1.69430 1.10383 1.27749 1.04025 0.82365 0.87962 0.91533 0.82566 0.83751 0.83799 0.81361 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.06 18.54 42.15 0.78 -10.28 16 2 C 0.22 4.87 15.71 -20.76 -0.33 4.54 16 3 C 0.19 4.20 5.36 -6.83 -0.04 4.16 16 4 N -0.42 -9.89 2.47 -119.29 -0.30 -10.19 16 5 C -0.31 -7.21 7.44 -15.04 -0.11 -7.33 16 6 H 0.11 2.66 5.96 -52.49 -0.31 2.35 16 7 C 0.04 1.01 5.35 -17.45 -0.09 0.91 16 8 N -0.88 -21.07 10.99 55.50 0.61 -20.46 16 9 Si 0.93 18.45 29.55 -169.99 -5.02 13.42 16 10 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 11 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 13 C 0.53 12.56 7.52 -12.67 -0.10 12.46 16 14 O -0.59 -14.68 16.00 5.17 0.08 -14.59 16 15 C 0.06 1.28 6.68 -82.44 -0.55 0.73 16 16 C -0.08 -1.43 9.72 -38.56 -0.37 -1.80 16 17 C 0.04 0.72 6.78 -83.95 -0.57 0.15 16 18 C -0.20 -2.71 10.98 -39.01 -0.43 -3.14 16 19 C -0.15 -1.72 10.80 -39.97 -0.43 -2.15 16 20 C -0.05 -0.59 11.62 -16.64 -0.19 -0.78 16 21 N -0.38 -5.67 2.95 -62.15 -0.18 -5.85 16 22 C 0.27 4.20 12.16 -89.23 -1.08 3.11 16 23 N -0.40 -7.86 6.40 -10.43 -0.07 -7.93 16 24 H 0.16 3.55 5.52 -51.93 -0.29 3.27 16 25 H 0.10 2.16 7.53 -51.93 -0.39 1.77 16 26 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 27 H 0.16 2.73 7.67 -52.49 -0.40 2.33 16 28 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -29.17 285.55 -6.31 -35.47 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.22 Total: 5.23 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: -4.30 Total: 10.88 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.85 Total: -54.71 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.17 -6.31 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292651280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.875 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds