Wall clock time and date at job start Mon Mar 30 2020 02:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47563 * 322.36554 * 3 2 1 5 5 C 1.36809 * 119.99910 * 264.44012 * 4 3 2 6 6 H 1.07999 * 120.00596 * 131.88730 * 5 4 3 7 7 C 1.39025 * 119.99746 * 311.87818 * 5 4 3 8 8 N 1.31381 * 120.00069 * 3.33335 * 7 5 4 9 9 Si 1.86798 * 120.00181 * 183.32789 * 7 5 4 10 10 H 1.48501 * 109.47215 * 90.00440 * 9 7 5 11 11 H 1.48500 * 109.47493 * 209.99966 * 9 7 5 12 12 H 1.48500 * 109.47139 * 330.00685 * 9 7 5 13 13 C 1.34774 * 120.00476 * 84.42869 * 4 3 2 14 14 O 1.21718 * 119.99780 * 4.78463 * 13 4 3 15 15 C 1.47086 * 120.00477 * 184.78058 * 13 4 3 16 16 C 1.38628 * 120.04471 * 174.13191 * 15 13 4 17 17 C 1.40567 * 118.26179 * 179.97438 * 16 15 13 18 18 C 1.38354 * 133.39390 * 180.02562 * 17 16 15 19 19 C 1.39647 * 106.99941 * 179.97438 * 18 17 16 20 20 C 1.35668 * 108.09080 * 359.97438 * 19 18 17 21 21 N 1.35965 * 109.06591 * 0.02562 * 20 19 18 22 22 C 1.36902 * 132.41354 * 180.02562 * 21 20 19 23 23 N 1.29796 * 121.49771 * 179.73031 * 22 21 20 24 24 H 1.09003 * 109.47377 * 202.36098 * 3 2 1 25 25 H 1.09005 * 109.46977 * 82.36716 * 3 2 1 26 26 H 0.96996 * 120.00232 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.87185 * 0.02562 * 16 15 13 28 28 H 1.08006 * 126.49729 * 359.95631 * 18 17 16 29 29 H 1.07991 * 125.95662 * 180.02562 * 19 18 17 30 30 H 1.07993 * 125.46932 * 180.02562 * 20 19 18 31 31 H 1.07999 * 119.24823 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.0929 0.8433 5 6 3.4330 -0.8530 2.1476 6 1 3.0645 -1.5018 2.9284 7 6 4.2493 0.2258 2.4679 8 7 4.6442 1.0530 1.5267 9 14 4.7843 0.4995 4.2366 10 1 6.0595 -0.2198 4.4850 11 1 4.9809 1.9520 4.4753 12 1 3.7381 -0.0161 5.1557 13 6 3.2153 -2.3352 0.3345 14 8 2.9997 -2.5320 -0.8472 15 6 3.6051 -3.4534 1.2070 16 6 3.6094 -4.7492 0.7145 17 6 3.9888 -5.7892 1.5808 18 6 4.1034 -7.1595 1.4278 19 6 4.5293 -7.6730 2.6546 20 6 4.6668 -6.6372 3.5200 21 7 4.3416 -5.4806 2.8836 22 6 4.3131 -4.1757 3.2969 23 7 3.9664 -3.2173 2.4932 24 1 2.9709 0.9512 0.3910 25 1 2.9713 -0.1357 -1.0186 26 1 5.2133 1.8060 1.7502 27 1 3.3293 -4.9543 -0.3081 28 1 3.9015 -7.7248 0.5300 29 1 4.7172 -8.7132 2.8758 30 1 4.9838 -6.7184 4.5492 31 1 4.5891 -3.9381 4.3136 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292651280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:59 Heat of formation + Delta-G solvation = 89.812850 kcal Electronic energy + Delta-G solvation = -19767.850060 eV Core-core repulsion = 16630.239050 eV Total energy + Delta-G solvation = -3137.611010 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.16813 -40.75623 -38.26582 -37.60721 -36.56823 -33.97588 -33.46903 -31.81887 -30.13939 -28.69976 -26.65879 -25.13822 -23.97875 -22.04017 -21.33206 -19.97366 -19.44198 -18.35042 -17.55185 -16.92678 -16.84135 -16.51900 -16.29036 -15.95641 -15.46069 -15.21048 -15.03142 -14.67464 -13.97302 -13.77731 -13.62841 -13.40686 -13.21169 -13.13554 -13.00109 -12.90163 -12.67838 -12.24914 -11.99210 -11.51649 -11.18272 -11.06963 -10.34005 -9.78552 -9.52459 -8.40404 -8.22271 -6.04872 -0.48931 0.41005 1.48570 1.53442 1.57584 1.67243 1.76571 1.79102 1.87395 2.06947 2.41515 2.81992 2.83620 3.00794 3.34118 3.47870 3.78048 3.87730 4.03841 4.32238 4.39867 4.56603 4.63740 4.76006 4.90846 5.07758 5.25015 5.33716 5.66785 5.71461 5.87543 5.89649 6.35459 6.50739 6.57320 6.89093 7.17855 7.38275 7.82376 8.82022 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.017643 B = 0.007292 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.681031 B = 3838.715130 C = 5030.778021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.228 3.772 3 C 0.196 3.804 4 N -0.430 5.430 5 C -0.312 4.312 6 H 0.115 0.885 7 C 0.004 3.996 8 N -0.907 5.907 9 Si 0.987 3.013 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.259 1.259 13 C 0.520 3.480 14 O -0.618 6.618 15 C 0.014 3.986 16 C -0.066 4.066 17 C -0.006 4.006 18 C -0.180 4.180 19 C -0.153 4.153 20 C -0.020 4.020 21 N -0.395 5.395 22 C 0.288 3.712 23 N -0.444 5.444 24 H 0.157 0.843 25 H 0.105 0.895 26 H 0.275 0.725 27 H 0.149 0.851 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.214 0.786 31 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.073 -12.719 8.081 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.089 4.089 3 C 0.069 3.931 4 N -0.146 5.146 5 C -0.440 4.440 6 H 0.132 0.868 7 C -0.197 4.197 8 N -0.546 5.546 9 Si 0.811 3.189 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.183 1.183 13 C 0.311 3.689 14 O -0.505 6.505 15 C -0.103 4.103 16 C -0.088 4.088 17 C -0.111 4.111 18 C -0.206 4.206 19 C -0.175 4.175 20 C -0.151 4.151 21 N -0.068 5.068 22 C 0.006 3.994 23 N -0.156 5.156 24 H 0.174 0.826 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.167 0.833 28 H 0.178 0.822 29 H 0.199 0.801 30 H 0.231 0.769 31 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 3.322 -11.398 7.705 14.153 hybrid contribution 0.608 -0.108 -0.056 0.620 sum 3.930 -11.506 7.649 14.365 Atomic orbital electron populations 1.80958 1.14083 1.10809 1.11183 1.30666 0.96297 0.91161 0.90822 1.19357 0.78040 0.97433 0.98224 1.43354 1.54174 1.05175 1.11948 1.20125 1.28113 1.13418 0.82385 0.86778 1.26295 0.94730 0.95647 1.03034 1.69610 1.34804 1.15473 1.34693 0.85005 0.79089 0.76850 0.77946 1.19542 1.21449 1.18320 1.18322 0.80252 0.84237 0.86110 1.90653 1.57885 1.85155 1.16786 1.20574 1.05440 0.92667 0.91591 1.21627 0.96600 0.90074 1.00541 1.19010 1.10705 0.95659 0.85722 1.21491 1.08126 0.89842 1.01174 1.21432 1.03692 1.00375 0.91953 1.22794 1.09037 0.81802 1.01484 1.43581 1.44071 1.08114 1.11031 1.26086 0.95366 0.76292 1.01647 1.69165 1.12696 1.29995 1.03720 0.82603 0.87700 0.91516 0.83301 0.82201 0.80060 0.76892 0.74162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -23.35 18.54 20.01 0.37 -22.98 16 2 C 0.23 10.55 15.71 89.44 1.41 11.96 16 3 C 0.20 9.00 5.36 84.57 0.45 9.46 16 4 N -0.43 -21.23 2.47 -649.54 -1.61 -22.84 16 5 C -0.31 -15.06 7.44 84.11 0.63 -14.44 16 6 H 0.12 5.42 5.96 -2.91 -0.02 5.40 16 7 C 0.00 0.19 5.35 84.95 0.45 0.65 16 8 N -0.91 -44.37 10.99 21.68 0.24 -44.13 16 9 Si 0.99 37.34 29.55 68.60 2.03 39.37 16 10 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 11 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 13 C 0.52 25.87 7.52 86.57 0.65 26.52 16 14 O -0.62 -32.58 16.00 -4.41 -0.07 -32.65 16 15 C 0.01 0.61 6.68 40.97 0.27 0.89 16 16 C -0.07 -2.46 9.72 22.93 0.22 -2.24 16 17 C -0.01 -0.20 6.78 38.69 0.26 0.06 16 18 C -0.18 -4.33 10.98 22.64 0.25 -4.08 16 19 C -0.15 -2.73 10.80 22.01 0.24 -2.49 16 20 C -0.02 -0.36 11.62 83.46 0.97 0.61 16 21 N -0.39 -10.42 2.95 -350.56 -1.04 -11.46 16 22 C 0.29 8.14 12.16 179.86 2.19 10.33 16 23 N -0.44 -17.22 6.40 -186.91 -1.20 -18.41 16 24 H 0.16 7.30 5.52 -2.39 -0.01 7.29 16 25 H 0.11 4.70 7.53 -2.38 -0.02 4.68 16 26 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 27 H 0.15 5.52 7.67 -2.91 -0.02 5.50 16 28 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 29 H 0.18 1.91 8.06 -2.92 -0.02 1.88 16 30 H 0.21 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.24 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -65.83 285.55 7.91 -57.93 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.19 Total: 17.94 kcal Atomic # 6 Polarization: 29.24 SS G_CDS: 7.99 Total: 37.23 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -3.23 Total: -119.81 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.07 Total: -32.65 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -65.83 7.91 -57.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292651280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.740 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds