Wall clock time and date at job start Mon Mar 30 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38261 * 120.36033 * 124.72115 * 3 2 1 5 5 C 1.39410 * 118.51337 * 179.76744 * 4 3 2 6 6 O 1.35516 * 120.45980 * 180.26383 * 5 4 3 7 7 N 1.32744 * 119.07728 * 0.51179 * 5 4 3 8 8 C 1.32519 * 120.63950 * 359.75105 * 7 5 4 9 9 S 1.76197 * 119.19579 * 180.02562 * 8 7 5 10 10 C 1.80998 * 99.99763 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46920 * 180.02562 * 10 9 8 12 12 H 1.08991 * 109.47402 * 60.00294 * 11 10 9 13 13 O 1.42900 * 109.47320 * 299.99685 * 11 10 9 14 14 C 1.50707 * 109.47038 * 179.97438 * 11 10 9 15 15 H 1.07997 * 119.99579 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99921 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99857 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99958 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47175 * 59.99923 * 18 16 14 20 20 H 1.48494 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46876 * 300.00344 * 18 16 14 22 22 N 1.32414 * 120.36179 * 305.00630 * 3 2 1 23 23 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 27 27 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 28 28 H 1.07997 * 120.74374 * 0.02696 * 4 3 2 29 29 H 0.96706 * 113.99661 * 270.24770 * 6 5 4 30 30 H 1.08998 * 109.47294 * 300.00122 * 10 9 8 31 31 H 1.09001 * 109.47348 * 59.99925 * 10 9 8 32 32 H 0.96699 * 114.00032 * 300.00575 * 13 11 10 33 33 H 0.97011 * 119.99743 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9060 1.8532 0.9806 5 6 3.3502 3.1740 0.9408 6 8 4.2110 3.6379 1.8791 7 7 2.9143 3.9724 -0.0260 8 6 2.0725 3.5225 -0.9453 9 16 1.5189 4.6150 -2.2119 10 6 2.4036 6.1209 -1.7369 11 6 2.0678 7.2421 -2.7224 12 1 0.9945 7.4309 -2.7061 13 8 2.4630 6.8529 -4.0394 14 6 2.8040 8.4961 -2.3266 15 1 3.4473 8.4935 -1.4591 16 6 2.6569 9.6463 -3.0724 17 7 1.8739 9.6492 -4.1290 18 14 3.5700 11.2005 -2.5822 19 1 5.0324 10.9432 -2.6040 20 1 3.2449 12.2883 -3.5393 21 1 3.1589 11.6052 -1.2138 22 7 1.6375 2.2704 -0.9358 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.2401 1.1815 1.7575 29 1 3.7785 4.0137 2.6581 30 1 2.1019 6.4181 -0.7325 31 1 3.4770 5.9320 -1.7528 32 1 3.4081 6.6685 -4.1281 33 1 1.7702 10.4587 -4.6536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307332245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:03 Heat of formation + Delta-G solvation = -55.940667 kcal Electronic energy + Delta-G solvation = -17801.296054 eV Core-core repulsion = 14760.515898 eV Total energy + Delta-G solvation = -3040.780157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02181 -37.76689 -35.93961 -35.02425 -32.19915 -31.99422 -30.83940 -29.68415 -25.57033 -24.96587 -24.55300 -22.04025 -21.10237 -18.92000 -17.76845 -17.26906 -16.91842 -15.85442 -15.47051 -14.68140 -14.58940 -14.52364 -14.37469 -14.11718 -13.85161 -13.64908 -12.68933 -12.46009 -12.19492 -11.76869 -11.57584 -11.39892 -11.25387 -11.06119 -10.90862 -10.64560 -10.34803 -10.17423 -9.88973 -9.87969 -9.33222 -9.14670 -8.64136 -8.33478 -7.35993 -6.07919 -4.27682 0.74203 0.96822 1.62650 2.70657 3.26944 3.32119 3.33862 3.35569 3.65809 4.05018 4.35136 4.55760 4.88871 4.91259 5.03660 5.05288 5.19269 5.29093 5.49364 5.63076 5.80552 5.87496 6.01272 6.06136 6.13673 6.20494 6.70255 6.91059 7.24879 7.53601 7.75597 7.93712 8.02659 8.73431 9.27098 9.48477 10.96184 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.004320 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.329188 B = 6479.846048 C = 7237.406246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.202 3.798 4 C -0.267 4.267 5 C 0.376 3.624 6 O -0.477 6.477 7 N -0.547 5.547 8 C 0.323 3.677 9 S 0.021 5.979 10 C -0.122 4.122 11 C 0.243 3.757 12 H 0.066 0.934 13 O -0.559 6.559 14 C -0.569 4.569 15 H 0.060 0.940 16 C 0.081 3.919 17 N -0.857 5.857 18 Si 0.895 3.105 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 N -0.511 5.511 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.147 0.853 29 H 0.407 0.593 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.349 0.651 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -16.763 11.013 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.052 3.948 4 C -0.296 4.296 5 C 0.185 3.815 6 O -0.285 6.285 7 N -0.276 5.276 8 C -0.051 4.051 9 S 0.260 5.740 10 C -0.271 4.271 11 C 0.183 3.817 12 H 0.084 0.916 13 O -0.362 6.362 14 C -0.609 4.609 15 H 0.078 0.922 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.722 3.278 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.201 1.201 22 N -0.230 5.230 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.266 0.734 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.193 0.807 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.512 -16.261 8.698 18.503 hybrid contribution 2.152 0.715 2.710 3.533 sum 0.640 -15.546 11.408 19.293 Atomic orbital electron populations 1.21679 0.93498 1.01972 1.03105 1.20547 0.97496 0.89317 1.03647 1.21655 0.89321 0.96121 0.87654 1.22567 1.04223 0.97989 1.04811 1.19456 0.85415 0.88491 0.88166 1.84705 1.32011 1.81176 1.30574 1.68464 1.14026 1.39476 1.05642 1.25490 0.90702 0.93143 0.95772 1.86357 1.56820 1.04314 1.26487 1.24932 1.02496 0.93957 1.05719 1.19261 0.97162 0.87119 0.78143 0.91586 1.86590 1.27119 1.90040 1.32430 1.21461 1.30364 0.95236 1.13844 0.92218 1.25030 0.94524 0.98658 0.94379 1.70069 1.35458 1.28144 1.15494 0.86633 0.80329 0.82397 0.78430 1.20029 1.21093 1.20051 1.68396 1.27121 1.02303 1.25224 0.91086 0.92006 0.92855 0.89194 0.89890 0.83490 0.73426 0.89236 0.89691 0.80703 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.78 37.16 0.36 -0.88 16 2 C -0.07 -0.63 6.36 -27.88 -0.18 -0.81 16 3 C 0.20 2.58 6.20 -82.33 -0.51 2.07 16 4 C -0.27 -3.18 9.75 -39.14 -0.38 -3.56 16 5 C 0.38 5.40 7.83 -16.72 -0.13 5.27 16 6 O -0.48 -5.71 13.57 -18.24 -0.25 -5.96 16 7 N -0.55 -9.64 9.16 -13.50 -0.12 -9.76 16 8 C 0.32 5.81 7.85 -90.87 -0.71 5.10 16 9 S 0.02 0.40 21.89 -107.50 -2.35 -1.95 16 10 C -0.12 -2.57 4.44 37.16 0.17 -2.40 16 11 C 0.24 6.08 2.87 -27.88 -0.08 6.00 16 12 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 13 O -0.56 -14.19 12.32 -35.23 -0.43 -14.62 16 14 C -0.57 -15.38 8.76 -34.44 -0.30 -15.68 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -24.93 12.84 55.43 0.71 -24.22 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 N -0.51 -8.27 9.99 -9.73 -0.10 -8.37 16 23 H 0.07 0.74 7.98 -51.93 -0.41 0.33 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.51 7.93 -51.93 -0.41 0.10 16 28 H 0.15 1.24 8.00 -52.49 -0.42 0.82 16 29 H 0.41 2.70 9.06 45.56 0.41 3.11 16 30 H 0.09 1.88 8.11 -51.92 -0.42 1.45 16 31 H 0.08 1.80 8.11 -51.92 -0.42 1.38 16 32 H 0.35 7.91 9.04 45.56 0.41 8.32 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 306.72 15.07 4.62 4.62 Total: -1.00 -32.59 306.72 -7.30 -39.90 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.50 Total: 7.24 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -1.86 Total: -2.76 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.49 Total: -42.35 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.68 Total: -20.59 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -2.35 Total: -1.95 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.59 -7.30 -39.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307332245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.046 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds