Wall clock time and date at job start Mon Mar 30 2020 01:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38261 * 120.36033 * 124.72115 * 3 2 1 5 5 C 1.39410 * 118.51337 * 179.76744 * 4 3 2 6 6 O 1.35516 * 120.45980 * 180.26383 * 5 4 3 7 7 N 1.32744 * 119.07728 * 0.51179 * 5 4 3 8 8 C 1.32519 * 120.63950 * 359.75105 * 7 5 4 9 9 S 1.76197 * 119.19579 * 180.02562 * 8 7 5 10 10 C 1.80998 * 99.99763 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.46920 * 180.02562 * 10 9 8 12 12 H 1.08991 * 109.47402 * 60.00294 * 11 10 9 13 13 O 1.42900 * 109.47320 * 299.99685 * 11 10 9 14 14 C 1.50707 * 109.47038 * 179.97438 * 11 10 9 15 15 H 1.07997 * 119.99579 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99921 * 179.97438 * 14 11 10 17 17 N 1.31511 * 119.99857 * 0.02562 * 16 14 11 18 18 Si 1.86801 * 119.99958 * 180.02562 * 16 14 11 19 19 H 1.48505 * 109.47175 * 59.99923 * 18 16 14 20 20 H 1.48494 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46876 * 300.00344 * 18 16 14 22 22 N 1.32414 * 120.36179 * 305.00630 * 3 2 1 23 23 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 27 27 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 28 28 H 1.07997 * 120.74374 * 0.02696 * 4 3 2 29 29 H 0.96706 * 113.99661 * 270.24770 * 6 5 4 30 30 H 1.08998 * 109.47294 * 300.00122 * 10 9 8 31 31 H 1.09001 * 109.47348 * 59.99925 * 10 9 8 32 32 H 0.96699 * 114.00032 * 300.00575 * 13 11 10 33 33 H 0.97011 * 119.99743 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9060 1.8532 0.9806 5 6 3.3502 3.1740 0.9408 6 8 4.2110 3.6379 1.8791 7 7 2.9143 3.9724 -0.0260 8 6 2.0725 3.5225 -0.9453 9 16 1.5189 4.6150 -2.2119 10 6 2.4036 6.1209 -1.7369 11 6 2.0678 7.2421 -2.7224 12 1 0.9945 7.4309 -2.7061 13 8 2.4630 6.8529 -4.0394 14 6 2.8040 8.4961 -2.3266 15 1 3.4473 8.4935 -1.4591 16 6 2.6569 9.6463 -3.0724 17 7 1.8739 9.6492 -4.1290 18 14 3.5700 11.2005 -2.5822 19 1 5.0324 10.9432 -2.6040 20 1 3.2449 12.2883 -3.5393 21 1 3.1589 11.6052 -1.2138 22 7 1.6375 2.2704 -0.9358 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.2401 1.1815 1.7575 29 1 3.7785 4.0137 2.6581 30 1 2.1019 6.4181 -0.7325 31 1 3.4770 5.9320 -1.7528 32 1 3.4081 6.6685 -4.1281 33 1 1.7702 10.4587 -4.6536 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307332245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:03 Heat of formation + Delta-G solvation = -82.870048 kcal Electronic energy + Delta-G solvation = -17802.463800 eV Core-core repulsion = 14760.515898 eV Total energy + Delta-G solvation = -3041.947902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.13543 -38.74007 -37.93707 -35.98154 -34.30755 -33.07533 -31.90145 -31.44681 -27.48317 -25.91604 -25.82620 -23.00943 -22.92261 -20.01786 -19.26006 -18.86586 -18.17650 -16.95558 -16.71084 -16.54637 -16.24232 -16.13310 -15.53550 -15.37887 -15.14102 -14.85993 -14.20086 -13.56162 -13.39276 -13.27214 -13.05544 -12.86469 -12.75237 -12.48172 -12.21196 -12.11496 -11.85903 -11.48185 -11.39765 -11.12230 -10.96387 -10.73429 -10.43818 -10.33870 -8.82494 -8.17539 -6.44904 -0.38113 -0.09355 0.22289 1.17616 1.42385 1.43628 1.52259 2.30210 2.38987 2.54631 3.08666 3.10564 3.49343 3.95867 4.07621 4.11377 4.17342 4.22909 4.28881 4.36440 4.47643 4.75038 4.91419 5.02140 5.10255 5.19486 5.42349 5.48792 5.63659 5.83576 5.95611 6.45891 6.63696 6.78278 7.26629 7.43537 8.87026 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030220 B = 0.004320 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.329188 B = 6479.846048 C = 7237.406246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 C 0.192 3.808 4 C -0.241 4.241 5 C 0.362 3.638 6 O -0.480 6.480 7 N -0.577 5.577 8 C 0.309 3.691 9 S -0.001 6.001 10 C -0.098 4.098 11 C 0.245 3.755 12 H 0.035 0.965 13 O -0.572 6.572 14 C -0.585 4.585 15 H 0.063 0.937 16 C 0.030 3.970 17 N -0.896 5.896 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.267 1.267 22 N -0.526 5.526 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.192 0.808 29 H 0.428 0.572 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.359 0.641 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -18.548 13.189 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C 0.044 3.956 4 C -0.268 4.268 5 C 0.172 3.828 6 O -0.291 6.291 7 N -0.308 5.308 8 C -0.067 4.067 9 S 0.237 5.763 10 C -0.247 4.247 11 C 0.185 3.815 12 H 0.053 0.947 13 O -0.376 6.376 14 C -0.624 4.624 15 H 0.081 0.919 16 C -0.174 4.174 17 N -0.532 5.532 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.192 1.192 22 N -0.246 5.246 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.139 0.861 28 H 0.209 0.791 29 H 0.291 0.709 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.204 0.796 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.388 -18.069 10.935 21.124 hybrid contribution 1.821 1.070 2.169 3.027 sum 1.432 -16.999 13.104 21.511 Atomic orbital electron populations 1.21666 0.93589 1.03155 1.01700 1.20746 0.97298 0.86775 1.05807 1.22453 0.89095 0.97313 0.86782 1.23007 1.01911 0.97220 1.04656 1.19784 0.85611 0.89344 0.88046 1.84676 1.31993 1.81381 1.31066 1.68343 1.14696 1.41101 1.06620 1.24957 0.92094 0.93609 0.96004 1.86203 1.57561 1.04057 1.28494 1.24368 1.02280 0.94025 1.04071 1.19017 0.95207 0.88390 0.78849 0.94738 1.86532 1.28068 1.90139 1.32832 1.21828 1.30380 0.96337 1.13873 0.91919 1.25897 0.95239 1.02020 0.94199 1.70204 1.37119 1.29117 1.16808 0.85532 0.79141 0.78162 0.78271 1.19227 1.20780 1.19196 1.68366 1.27541 1.01952 1.26758 0.93735 0.89528 0.93055 0.88504 0.86109 0.79078 0.70895 0.89612 0.90068 0.79560 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.78 71.98 0.70 -1.40 16 2 C -0.07 -0.94 6.36 29.85 0.19 -0.75 16 3 C 0.19 4.39 6.20 42.48 0.26 4.65 16 4 C -0.24 -4.85 9.75 22.56 0.22 -4.63 16 5 C 0.36 9.64 7.83 84.84 0.66 10.30 16 6 O -0.48 -10.30 13.57 -88.19 -1.20 -11.50 16 7 N -0.58 -20.10 9.16 -309.33 -2.83 -22.93 16 8 C 0.31 11.16 7.85 180.43 1.42 12.57 16 9 S 0.00 -0.05 21.89 -56.49 -1.24 -1.29 16 10 C -0.10 -4.28 4.44 71.98 0.32 -3.96 16 11 C 0.24 12.73 2.87 29.85 0.09 12.82 16 12 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 13 O -0.57 -30.03 12.32 -148.98 -1.84 -31.87 16 14 C -0.58 -32.19 8.76 25.60 0.22 -31.97 16 15 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 16 C 0.03 1.66 5.40 84.65 0.46 2.12 16 17 N -0.90 -53.31 12.84 21.45 0.28 -53.04 16 18 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 N -0.53 -16.65 9.99 -184.70 -1.85 -18.50 16 23 H 0.04 0.89 7.98 -2.38 -0.02 0.87 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.12 0.80 7.93 -2.39 -0.02 0.78 16 28 H 0.19 2.10 8.00 -2.91 -0.02 2.07 16 29 H 0.43 4.57 9.06 -74.05 -0.67 3.90 16 30 H 0.09 3.72 8.11 -2.40 -0.02 3.70 16 31 H 0.08 3.54 8.11 -2.39 -0.02 3.52 16 32 H 0.36 16.79 9.04 -74.06 -0.67 16.12 16 33 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 Total: -1.00 -72.08 306.72 -2.29 -74.37 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.19 Total: 19.87 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.55 Total: -0.24 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -4.40 Total: -94.47 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -3.03 Total: -43.36 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.24 Total: -1.29 kcal Total: -72.08 -2.29 -74.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307332245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.501 kcal (2) G-P(sol) polarization free energy of solvation -72.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds