Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00004 * 2 1 4 4 O 1.20821 * 120.00476 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99618 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46870 * 179.97438 * 5 3 2 7 7 C 1.36942 * 120.00013 * 270.00091 * 6 5 3 8 8 H 1.07999 * 119.99905 * 142.10028 * 7 6 5 9 9 C 1.38808 * 119.99608 * 322.09882 * 7 6 5 10 10 N 1.31620 * 119.99750 * 156.97278 * 9 7 6 11 11 Si 1.86803 * 120.00407 * 336.96876 * 9 7 6 12 12 H 1.48502 * 109.46929 * 95.70328 * 11 9 7 13 13 H 1.48497 * 109.47091 * 215.70598 * 11 9 7 14 14 H 1.48501 * 109.47024 * 335.70725 * 11 9 7 15 15 C 1.46502 * 120.00093 * 90.00176 * 6 5 3 16 16 C 1.52997 * 109.47099 * 89.75230 * 15 6 5 17 17 C 1.50706 * 109.47062 * 180.02562 * 16 15 6 18 18 C 1.33634 * 122.75080 * 124.72861 * 17 16 15 19 19 S 1.76199 * 107.92575 * 179.97438 * 18 17 16 20 20 C 1.70981 * 90.27995 * 0.27894 * 19 18 17 21 21 N 1.29023 * 110.16881 * 359.83971 * 20 19 18 22 22 H 1.09002 * 109.47527 * 300.00609 * 1 2 3 23 23 H 1.09000 * 109.47142 * 60.00063 * 1 2 3 24 24 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47223 * 60.00470 * 5 3 2 26 26 H 1.08999 * 109.47608 * 299.99360 * 5 3 2 27 27 H 0.97001 * 120.00348 * 179.97438 * 10 9 7 28 28 H 1.09000 * 109.46593 * 329.75297 * 15 6 5 29 29 H 1.08995 * 109.46915 * 209.75878 * 15 6 5 30 30 H 1.09000 * 109.47343 * 60.00527 * 16 15 6 31 31 H 1.08996 * 109.47374 * 299.99761 * 16 15 6 32 32 H 1.08003 * 126.03607 * 0.04867 * 18 17 16 33 33 H 1.08001 * 124.91708 * 179.83128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 3.8832 4.3702 -1.2858 9 6 4.7504 2.6704 -2.2611 10 7 4.5397 3.0976 -3.4881 11 14 5.8221 1.1691 -1.9659 12 1 5.0037 -0.0608 -2.1173 13 1 6.9309 1.1505 -2.9536 14 1 6.3836 1.2241 -0.5923 15 6 4.1889 3.3830 1.2682 16 6 5.6428 3.2136 1.7137 17 6 5.8558 3.9365 3.0187 18 6 6.3405 3.3336 4.1084 19 16 6.4285 4.5319 5.3973 20 6 5.7969 5.7224 4.3450 21 7 5.5731 5.2135 3.1807 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9564 0.7805 -0.8892 26 1 3.9557 0.7809 0.8908 27 1 4.9411 2.6330 -4.2391 28 1 3.5257 2.9671 2.0267 29 1 3.9704 4.4426 1.1360 30 1 6.3060 3.6294 0.9552 31 1 5.8612 2.1539 1.8459 32 1 6.6287 2.2956 4.1851 33 1 5.6120 6.7514 4.6158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307513184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = -9.174499 kcal Electronic energy + Delta-G solvation = -18504.123492 eV Core-core repulsion = 15465.371269 eV Total energy + Delta-G solvation = -3038.752223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75743 -39.54507 -36.46734 -35.24268 -32.50844 -31.36335 -29.21961 -27.89942 -26.20079 -25.14888 -23.81527 -21.31176 -20.08699 -19.38643 -17.73878 -17.25116 -16.83371 -16.06361 -15.64952 -15.47666 -14.95773 -14.75292 -14.03981 -13.46061 -13.32962 -13.15259 -12.84963 -12.82354 -12.41530 -12.06250 -11.70328 -11.63038 -11.35595 -11.08620 -10.66829 -10.29733 -10.17120 -10.14934 -9.73488 -9.62532 -9.49113 -9.39127 -8.69499 -8.61137 -7.05670 -6.09037 -3.52255 0.81810 1.47844 1.79808 2.97755 3.07701 3.20861 3.36857 3.40760 3.43713 4.35464 4.40682 4.81447 5.17651 5.29008 5.34548 5.45465 5.50119 5.53817 5.65274 5.82873 5.88388 5.91871 6.04962 6.13316 6.23639 6.37195 6.71748 6.93370 7.08766 7.87377 7.90149 8.31674 8.59864 8.86535 9.57143 9.92328 11.05759 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.005932 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.318594 B = 4719.344681 C = 5654.131663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.426 3.574 4 O -0.492 6.492 5 C 0.141 3.859 6 N -0.572 5.572 7 C -0.268 4.268 8 H 0.084 0.916 9 C 0.038 3.962 10 N -0.887 5.887 11 Si 0.862 3.138 12 H -0.281 1.281 13 H -0.295 1.295 14 H -0.260 1.260 15 C 0.164 3.836 16 C -0.070 4.070 17 C 0.085 3.915 18 C -0.261 4.261 19 S 0.079 5.921 20 C 0.026 3.974 21 N -0.457 5.457 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.266 0.734 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.175 0.825 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -3.138 15.844 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.295 6.295 3 C 0.264 3.736 4 O -0.376 6.376 5 C 0.011 3.989 6 N -0.291 5.291 7 C -0.397 4.397 8 H 0.102 0.898 9 C -0.164 4.164 10 N -0.526 5.526 11 Si 0.691 3.309 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.185 1.185 15 C 0.037 3.963 16 C -0.113 4.113 17 C -0.046 4.046 18 C -0.400 4.400 19 S 0.330 5.670 20 C -0.273 4.273 21 N -0.170 5.170 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.685 -2.422 16.265 16.530 hybrid contribution 0.184 -1.199 -0.792 1.448 sum 1.868 -3.621 15.473 16.000 Atomic orbital electron populations 1.23056 0.78718 1.02342 1.01897 1.86615 1.21971 1.35907 1.85045 1.26523 0.94234 0.80819 0.71995 1.90574 1.66725 1.36380 1.43966 1.21298 0.85247 0.89544 1.02798 1.43928 1.73786 1.07948 1.03416 1.18820 1.35583 0.98186 0.87083 0.89837 1.25509 0.97773 0.97940 0.95139 1.69895 1.43056 1.41775 0.97908 0.87127 0.81822 0.83181 0.78758 1.20890 1.22192 1.18475 1.20849 0.91095 0.98099 0.86217 1.21019 1.02148 0.97940 0.90156 1.20675 0.97693 0.88700 0.97547 1.26836 1.12929 1.04703 0.95509 1.83852 1.61135 1.03671 1.18293 1.28448 1.02676 1.04543 0.91651 1.66163 1.17766 1.11936 1.21132 0.92788 0.92461 0.89237 0.88947 0.89838 0.92435 0.94303 0.91244 0.89159 0.91084 0.80791 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 101.05 1.07 1.58 16 2 O -0.38 -7.16 10.56 -39.25 -0.41 -7.58 16 3 C 0.43 9.35 8.03 36.01 0.29 9.64 16 4 O -0.49 -12.27 16.18 -18.75 -0.30 -12.58 16 5 C 0.14 3.03 5.11 -5.19 -0.03 3.00 16 6 N -0.57 -13.52 1.56 -174.61 -0.27 -13.79 16 7 C -0.27 -7.47 9.90 -15.06 -0.15 -7.62 16 8 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.04 1.07 5.29 -17.43 -0.09 0.98 16 10 N -0.89 -26.74 13.97 55.49 0.78 -25.97 16 11 Si 0.86 20.62 25.10 -169.99 -4.27 16.35 16 12 H -0.28 -6.51 6.68 56.52 0.38 -6.13 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.26 -5.79 7.11 56.52 0.40 -5.38 16 15 C 0.16 3.34 5.57 -4.04 -0.02 3.32 16 16 C -0.07 -1.25 6.03 -27.88 -0.17 -1.42 16 17 C 0.09 1.35 6.08 -84.22 -0.51 0.84 16 18 C -0.26 -3.36 11.07 29.12 0.32 -3.04 16 19 S 0.08 0.84 23.22 -107.50 -2.50 -1.66 16 20 C 0.03 0.31 12.23 51.58 0.63 0.94 16 21 N -0.46 -7.35 10.34 -11.89 -0.12 -7.47 16 22 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 23 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.09 2.11 3.37 -51.93 -0.18 1.94 16 26 H 0.08 1.47 8.07 -51.93 -0.42 1.05 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.07 1.54 7.97 -51.93 -0.41 1.13 16 30 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 32 H 0.17 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -33.09 302.24 -5.17 -38.26 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -3.96 Total: 1.64 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 1.34 Total: 8.23 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.38 Total: -47.23 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.72 Total: -20.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.27 Total: 16.35 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.09 -5.17 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307513184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.089 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds