Wall clock time and date at job start Mon Mar 30 2020 02:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34228 * 117.00004 * 2 1 4 4 O 1.20821 * 120.00476 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99618 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.46870 * 179.97438 * 5 3 2 7 7 C 1.36942 * 120.00013 * 270.00091 * 6 5 3 8 8 H 1.07999 * 119.99905 * 142.10028 * 7 6 5 9 9 C 1.38808 * 119.99608 * 322.09882 * 7 6 5 10 10 N 1.31620 * 119.99750 * 156.97278 * 9 7 6 11 11 Si 1.86803 * 120.00407 * 336.96876 * 9 7 6 12 12 H 1.48502 * 109.46929 * 95.70328 * 11 9 7 13 13 H 1.48497 * 109.47091 * 215.70598 * 11 9 7 14 14 H 1.48501 * 109.47024 * 335.70725 * 11 9 7 15 15 C 1.46502 * 120.00093 * 90.00176 * 6 5 3 16 16 C 1.52997 * 109.47099 * 89.75230 * 15 6 5 17 17 C 1.50706 * 109.47062 * 180.02562 * 16 15 6 18 18 C 1.33634 * 122.75080 * 124.72861 * 17 16 15 19 19 S 1.76199 * 107.92575 * 179.97438 * 18 17 16 20 20 C 1.70981 * 90.27995 * 0.27894 * 19 18 17 21 21 N 1.29023 * 110.16881 * 359.83971 * 20 19 18 22 22 H 1.09002 * 109.47527 * 300.00609 * 1 2 3 23 23 H 1.09000 * 109.47142 * 60.00063 * 1 2 3 24 24 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47223 * 60.00470 * 5 3 2 26 26 H 1.08999 * 109.47608 * 299.99360 * 5 3 2 27 27 H 0.97001 * 120.00348 * 179.97438 * 10 9 7 28 28 H 1.09000 * 109.46593 * 329.75297 * 15 6 5 29 29 H 1.08995 * 109.46915 * 209.75878 * 15 6 5 30 30 H 1.09000 * 109.47343 * 60.00527 * 16 15 6 31 31 H 1.08996 * 109.47374 * 299.99761 * 16 15 6 32 32 H 1.08003 * 126.03607 * 0.04867 * 18 17 16 33 33 H 1.08001 * 124.91708 * 179.83128 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.1764 3.3355 -1.1864 8 1 3.8832 4.3702 -1.2858 9 6 4.7504 2.6704 -2.2611 10 7 4.5397 3.0976 -3.4881 11 14 5.8221 1.1691 -1.9659 12 1 5.0037 -0.0608 -2.1173 13 1 6.9309 1.1505 -2.9536 14 1 6.3836 1.2241 -0.5923 15 6 4.1889 3.3830 1.2682 16 6 5.6428 3.2136 1.7137 17 6 5.8558 3.9365 3.0187 18 6 6.3405 3.3336 4.1084 19 16 6.4285 4.5319 5.3973 20 6 5.7969 5.7224 4.3450 21 7 5.5731 5.2135 3.1807 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.9564 0.7805 -0.8892 26 1 3.9557 0.7809 0.8908 27 1 4.9411 2.6330 -4.2391 28 1 3.5257 2.9671 2.0267 29 1 3.9704 4.4426 1.1360 30 1 6.3060 3.6294 0.9552 31 1 5.8612 2.1539 1.8459 32 1 6.6287 2.2956 4.1851 33 1 5.6120 6.7514 4.6158 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307513184.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:08 Heat of formation + Delta-G solvation = -32.024722 kcal Electronic energy + Delta-G solvation = -18505.114352 eV Core-core repulsion = 15465.371269 eV Total energy + Delta-G solvation = -3039.743083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28863 -40.75491 -38.16169 -36.97449 -34.26956 -33.03421 -30.59138 -29.39350 -27.74358 -26.45420 -25.25341 -22.98948 -21.80909 -20.44767 -19.17861 -18.80971 -18.49654 -17.72417 -17.14466 -16.83622 -16.63107 -16.17536 -15.35836 -15.06461 -14.90202 -14.51685 -14.23585 -14.14878 -13.94768 -13.75249 -13.22769 -13.08689 -12.86516 -12.65877 -12.25056 -12.10831 -11.75968 -11.69971 -11.63571 -11.39643 -10.68580 -10.49167 -10.34695 -9.68646 -8.97248 -8.24371 -5.68662 -0.12598 0.58887 0.84568 1.31658 1.34265 1.46461 1.58721 1.84866 1.94514 2.39584 2.98155 3.19686 3.46577 4.07721 4.20156 4.23603 4.30886 4.34393 4.35286 4.36839 4.47397 4.54784 4.68011 4.70006 4.76949 5.15193 5.19949 5.40886 5.47656 5.85552 6.14401 6.75219 6.92164 7.00368 7.48404 7.86812 8.95239 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.005932 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.318594 B = 4719.344681 C = 5654.131663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.373 6.373 3 C 0.428 3.572 4 O -0.534 6.534 5 C 0.135 3.865 6 N -0.583 5.583 7 C -0.266 4.266 8 H 0.026 0.974 9 C -0.021 4.021 10 N -0.944 5.944 11 Si 0.935 3.065 12 H -0.262 1.262 13 H -0.303 1.303 14 H -0.228 1.228 15 C 0.170 3.830 16 C -0.057 4.057 17 C 0.052 3.948 18 C -0.258 4.258 19 S 0.159 5.841 20 C 0.014 3.986 21 N -0.510 5.510 22 H 0.060 0.940 23 H 0.045 0.955 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.267 0.733 28 H 0.052 0.948 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.200 0.800 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 -5.924 19.110 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C 0.269 3.731 4 O -0.422 6.422 5 C 0.006 3.994 6 N -0.303 5.303 7 C -0.396 4.396 8 H 0.043 0.957 9 C -0.217 4.217 10 N -0.586 5.586 11 Si 0.760 3.240 12 H -0.189 1.189 13 H -0.231 1.231 14 H -0.150 1.150 15 C 0.045 3.955 16 C -0.099 4.099 17 C -0.079 4.079 18 C -0.397 4.397 19 S 0.411 5.589 20 C -0.284 4.284 21 N -0.224 5.224 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.154 0.846 25 H 0.102 0.898 26 H 0.152 0.848 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.217 0.783 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.728 -5.231 19.597 20.465 hybrid contribution -0.287 -0.264 -1.664 1.709 sum 2.441 -5.494 17.933 18.914 Atomic orbital electron populations 1.23439 0.76177 1.05340 1.01692 1.86559 1.24296 1.33802 1.84243 1.26458 0.94634 0.81010 0.71009 1.90571 1.67655 1.37903 1.46042 1.21454 0.85113 0.88146 1.04651 1.43921 1.74712 1.08829 1.02829 1.18496 1.35469 0.96456 0.89177 0.95669 1.26249 0.98827 1.02410 0.94262 1.70050 1.44818 1.44636 0.99137 0.85970 0.79083 0.78949 0.79980 1.18856 1.23064 1.15004 1.20755 0.93666 0.95888 0.85188 1.20685 0.98851 0.99459 0.90891 1.20390 1.00779 0.89186 0.97590 1.27181 1.10561 1.06377 0.95534 1.83591 1.58799 1.00998 1.15462 1.28932 1.01875 1.06324 0.91237 1.66123 1.19942 1.12776 1.23590 0.92168 0.93646 0.84596 0.89786 0.84824 0.92451 0.92940 0.94714 0.92126 0.88740 0.78319 0.76015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.94 16 2 O -0.37 -13.20 10.56 -51.40 -0.54 -13.75 16 3 C 0.43 18.38 8.03 71.24 0.57 18.95 16 4 O -0.53 -27.02 16.18 21.98 0.36 -26.66 16 5 C 0.13 5.54 5.11 85.63 0.44 5.98 16 6 N -0.58 -27.89 1.56 -706.33 -1.10 -28.99 16 7 C -0.27 -15.64 9.90 84.03 0.83 -14.80 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 9 C -0.02 -1.19 5.29 84.86 0.45 -0.74 16 10 N -0.94 -59.72 13.97 21.65 0.30 -59.41 16 11 Si 0.94 42.48 25.10 68.60 1.72 44.20 16 12 H -0.26 -11.05 6.68 99.48 0.66 -10.39 16 13 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.23 -9.06 7.11 99.48 0.71 -8.35 16 15 C 0.17 7.09 5.57 86.38 0.48 7.57 16 16 C -0.06 -1.99 6.03 29.85 0.18 -1.81 16 17 C 0.05 1.59 6.08 41.52 0.25 1.84 16 18 C -0.26 -5.78 11.07 66.77 0.74 -5.04 16 19 S 0.16 2.79 23.22 -56.49 -1.31 1.47 16 20 C 0.01 0.31 12.23 130.66 1.60 1.91 16 21 N -0.51 -16.29 10.34 -191.55 -1.98 -18.27 16 22 H 0.06 1.59 8.13 -2.39 -0.02 1.58 16 23 H 0.04 1.36 8.13 -2.39 -0.02 1.34 16 24 H 0.14 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.08 3.64 3.37 -2.39 -0.01 3.63 16 26 H 0.13 4.13 8.07 -2.39 -0.02 4.11 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.05 2.00 8.07 -2.39 -0.02 1.99 16 29 H 0.03 1.65 7.97 -2.39 -0.02 1.63 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.09 2.78 8.03 -2.39 -0.02 2.76 16 32 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.22 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -77.80 302.24 5.26 -72.54 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.07 Total: 13.07 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.74 Total: 15.80 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -2.78 Total: -106.67 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.19 Total: -40.41 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.72 Total: 44.20 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.47 kcal Total: -77.80 5.26 -72.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307513184.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.518 kcal (2) G-P(sol) polarization free energy of solvation -77.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds