Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 S 1.76199 * 120.41969 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40134 * 23.51479 * 7 6 5 9 9 O 1.42096 * 106.40255 * 156.43397 * 7 6 5 10 10 N 1.65597 * 107.21922 * 269.97587 * 7 6 5 11 11 C 1.46498 * 119.99998 * 64.99392 * 10 7 6 12 12 C 1.53004 * 109.47181 * 165.00473 * 11 10 7 13 13 C 1.50698 * 109.47122 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00272 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99978 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47391 * 89.99507 * 17 15 13 19 19 H 1.48496 * 109.46995 * 209.99822 * 17 15 13 20 20 H 1.48508 * 109.46889 * 329.99584 * 17 15 13 21 21 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 23 23 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 24 24 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 25 25 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 26 26 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 27 27 H 0.96996 * 120.00027 * 245.00138 * 10 7 6 28 28 H 1.08997 * 109.47437 * 285.00282 * 11 10 7 29 29 H 1.08998 * 109.47287 * 45.00793 * 11 10 7 30 30 H 1.09005 * 109.46902 * 300.00514 * 12 11 10 31 31 H 1.09001 * 109.46970 * 59.99510 * 12 11 10 32 32 H 0.97003 * 119.99902 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.79539 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 16 4.5393 -2.6346 0.0002 8 8 5.8090 -2.3034 0.5457 9 8 3.6990 -3.6433 0.5440 10 7 4.8034 -3.0484 -1.5814 11 6 5.6164 -2.1826 -2.4391 12 6 6.0158 -2.9469 -3.7030 13 6 6.8526 -2.0565 -4.5850 14 1 7.0774 -1.0467 -4.2750 15 6 7.3312 -2.5311 -5.7879 16 7 7.0578 -3.7609 -6.1651 17 14 8.3690 -1.4277 -6.8809 18 1 9.8027 -1.5904 -6.5299 19 1 8.1617 -1.8032 -8.3026 20 1 7.9676 -0.0122 -6.6791 21 6 2.2089 -1.1955 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6676 2.1275 -0.0007 26 1 5.3047 0.1285 0.0005 27 1 4.4197 -3.8639 -1.9398 28 1 5.0397 -1.2999 -2.7153 29 1 6.5134 -1.8768 -1.9008 30 1 6.5925 -3.8297 -3.4267 31 1 5.1188 -3.2528 -4.2413 32 1 7.3948 -4.0949 -7.0112 33 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309395236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = -54.140192 kcal Electronic energy + Delta-G solvation = -18198.926274 eV Core-core repulsion = 15158.224191 eV Total energy + Delta-G solvation = -3040.702082 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40692 -37.13235 -35.73617 -35.46517 -33.90519 -32.78427 -32.41336 -29.18749 -27.64398 -24.54665 -24.28622 -22.78708 -21.20521 -19.30638 -17.81477 -17.39051 -16.98214 -16.65782 -16.28309 -15.46487 -14.61929 -14.56573 -14.08658 -14.00831 -13.85202 -13.42268 -13.09288 -13.00504 -12.60901 -12.50123 -12.00917 -11.92096 -11.82262 -11.33925 -11.28892 -11.10990 -10.66340 -10.54293 -10.33627 -9.73305 -9.62857 -9.35371 -9.29468 -8.99718 -8.43872 -6.10738 -4.14315 0.33204 0.62520 0.94149 3.12353 3.28289 3.34727 3.37543 3.42217 3.86015 4.18267 4.21069 4.39369 4.52147 4.63001 4.71576 4.86245 5.25627 5.25914 5.26364 5.37796 5.56684 5.68709 5.70013 5.81888 6.12106 6.32255 6.40150 6.65931 7.32241 7.51956 7.58436 7.60607 7.87379 8.24659 8.91456 9.50639 11.00646 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.004891 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.393655 B = 5723.393796 C = 6296.611385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.163 4.163 3 C 0.147 3.853 4 N -0.492 5.492 5 C 0.196 3.804 6 C -0.725 4.725 7 S 2.698 3.302 8 O -0.954 6.954 9 O -0.968 6.968 10 N -1.108 6.108 11 C 0.116 3.884 12 C 0.018 3.982 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.024 3.976 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.162 0.838 26 H 0.175 0.825 27 H 0.418 0.582 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.553 6.249 11.704 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.166 4.166 3 C -0.010 4.010 4 N -0.200 5.200 5 C 0.037 3.963 6 C -0.811 4.811 7 S 2.785 3.215 8 O -0.944 6.944 9 O -0.958 6.958 10 N -0.870 5.870 11 C -0.008 4.008 12 C -0.021 4.021 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.003 4.003 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.179 0.821 26 H 0.192 0.808 27 H 0.253 0.747 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.730 6.691 12.375 18.317 hybrid contribution -0.435 0.017 -1.234 1.309 sum -12.165 6.708 11.141 17.808 Atomic orbital electron populations 1.20738 0.89438 1.03440 1.03062 1.21031 0.98085 0.94262 1.03207 1.23048 0.90171 0.97749 0.90027 1.67851 1.08216 1.30901 1.13073 1.22674 1.00846 0.86038 0.86733 1.32192 1.08337 1.21961 1.18640 1.01821 0.73684 0.73001 0.73020 1.93592 1.39377 1.84600 1.76819 1.93558 1.69129 1.55907 1.77184 1.55485 1.65873 1.34997 1.30690 1.21701 0.92772 0.92585 0.93773 1.19286 0.97142 0.95999 0.89632 1.21080 1.32504 0.99283 1.03556 0.92221 1.24996 0.96254 0.95134 0.97840 1.69955 1.45372 1.15457 1.22337 0.86527 0.80662 0.80814 0.79622 1.20482 1.21203 1.19772 1.21248 0.91742 0.99349 0.87960 0.90481 0.90924 0.90953 0.82112 0.80832 0.74678 0.93069 0.91059 0.95447 0.95785 0.92801 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.04 36.01 0.36 -0.37 16 2 C -0.16 -1.67 5.90 -104.48 -0.62 -2.29 16 3 C 0.15 1.60 10.86 -17.55 -0.19 1.41 16 4 N -0.49 -6.72 10.36 -13.26 -0.14 -6.85 16 5 C 0.20 2.74 10.69 -17.55 -0.19 2.55 16 6 C -0.72 -9.89 5.96 -39.44 -0.24 -10.12 16 7 S 2.70 40.76 5.75 -107.50 -0.62 40.14 16 8 O -0.95 -16.89 16.78 -57.17 -0.96 -17.85 16 9 O -0.97 -15.79 17.36 -57.17 -0.99 -16.78 16 10 N -1.11 -17.66 6.00 -10.61 -0.06 -17.73 16 11 C 0.12 2.22 6.16 -4.04 -0.02 2.19 16 12 C 0.02 0.44 5.11 -27.88 -0.14 0.30 16 13 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.02 0.28 9.33 -39.28 -0.37 -0.09 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 24 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 25 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 26 H 0.17 2.27 7.63 -52.49 -0.40 1.87 16 27 H 0.42 6.11 8.65 -34.47 -0.30 5.81 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.36 7.75 -51.93 -0.40 0.95 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.15 1.51 7.71 -52.48 -0.40 1.11 16 LS Contribution 303.63 15.07 4.58 4.58 Total: -1.00 -33.34 303.63 -8.29 -41.64 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.00 Total: 1.25 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -1.81 Total: -19.30 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 0.54 Total: -49.66 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.95 Total: -34.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 40.76 SS G_CDS: -0.62 Total: 40.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.34 -8.29 -41.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309395236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.501 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds