Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 S 1.76199 * 120.41969 * 180.02562 * 6 5 4 8 8 O 1.42103 * 106.40134 * 23.51479 * 7 6 5 9 9 O 1.42096 * 106.40255 * 156.43397 * 7 6 5 10 10 N 1.65597 * 107.21922 * 269.97587 * 7 6 5 11 11 C 1.46498 * 119.99998 * 64.99392 * 10 7 6 12 12 C 1.53004 * 109.47181 * 165.00473 * 11 10 7 13 13 C 1.50698 * 109.47122 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00272 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99731 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99848 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99978 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47391 * 89.99507 * 17 15 13 19 19 H 1.48496 * 109.46995 * 209.99822 * 17 15 13 20 20 H 1.48508 * 109.46889 * 329.99584 * 17 15 13 21 21 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 23 23 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 24 24 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 25 25 H 1.07994 * 119.62230 * 359.95780 * 3 2 1 26 26 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 27 27 H 0.96996 * 120.00027 * 245.00138 * 10 7 6 28 28 H 1.08997 * 109.47437 * 285.00282 * 11 10 7 29 29 H 1.08998 * 109.47287 * 45.00793 * 11 10 7 30 30 H 1.09005 * 109.46902 * 300.00514 * 12 11 10 31 31 H 1.09001 * 109.46970 * 59.99510 * 12 11 10 32 32 H 0.97003 * 119.99902 * 180.02562 * 16 15 13 33 33 H 1.08003 * 120.79539 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 16 4.5393 -2.6346 0.0002 8 8 5.8090 -2.3034 0.5457 9 8 3.6990 -3.6433 0.5440 10 7 4.8034 -3.0484 -1.5814 11 6 5.6164 -2.1826 -2.4391 12 6 6.0158 -2.9469 -3.7030 13 6 6.8526 -2.0565 -4.5850 14 1 7.0774 -1.0467 -4.2750 15 6 7.3312 -2.5311 -5.7879 16 7 7.0578 -3.7609 -6.1651 17 14 8.3690 -1.4277 -6.8809 18 1 9.8027 -1.5904 -6.5299 19 1 8.1617 -1.8032 -8.3026 20 1 7.9676 -0.0122 -6.6791 21 6 2.2089 -1.1955 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6676 2.1275 -0.0007 26 1 5.3047 0.1285 0.0005 27 1 4.4197 -3.8639 -1.9398 28 1 5.0397 -1.2999 -2.7153 29 1 6.5134 -1.8768 -1.9008 30 1 6.5925 -3.8297 -3.4267 31 1 5.1188 -3.2528 -4.2413 32 1 7.3948 -4.0949 -7.0112 33 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309395236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = -79.120072 kcal Electronic energy + Delta-G solvation = -18200.009482 eV Core-core repulsion = 15158.224191 eV Total energy + Delta-G solvation = -3041.785291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31634 -38.44495 -37.07791 -37.02600 -34.74187 -34.71251 -33.36071 -31.02291 -28.35172 -26.43535 -25.23463 -23.67613 -22.99271 -20.56413 -19.01843 -18.61736 -18.23867 -17.90035 -17.69538 -16.84336 -16.44473 -15.58460 -15.54028 -15.37996 -14.77634 -14.41845 -14.34533 -13.83942 -13.71594 -13.43470 -13.34425 -13.27981 -13.20570 -13.11756 -12.99122 -12.47076 -12.40410 -12.21106 -11.52096 -11.37531 -11.27721 -10.74980 -10.58791 -10.33050 -10.17094 -8.20652 -6.31038 -0.77213 -0.45547 0.03406 1.43957 1.44759 1.55343 1.92735 2.40196 2.43765 2.69014 3.14335 3.14698 3.32819 3.70191 3.75767 3.87919 4.02341 4.18202 4.38024 4.51667 4.64896 4.71247 4.81492 4.82701 4.94819 5.09639 5.13865 5.49694 5.50781 5.63265 5.80959 6.00775 6.22296 6.65925 6.84584 7.38343 8.91347 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021169 B = 0.004891 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.393655 B = 5723.393796 C = 6296.611385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.154 4.154 3 C 0.143 3.857 4 N -0.513 5.513 5 C 0.176 3.824 6 C -0.729 4.729 7 S 2.721 3.279 8 O -0.983 6.983 9 O -0.979 6.979 10 N -1.108 6.108 11 C 0.132 3.868 12 C 0.020 3.980 13 C -0.544 4.544 14 H 0.067 0.933 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.963 3.037 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.262 1.262 21 C 0.009 3.991 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.198 0.802 26 H 0.173 0.827 27 H 0.423 0.577 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.003 0.997 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 7.946 11.915 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.157 4.157 3 C -0.013 4.013 4 N -0.222 5.222 5 C 0.018 3.982 6 C -0.819 4.819 7 S 2.810 3.190 8 O -0.973 6.973 9 O -0.969 6.969 10 N -0.870 5.870 11 C 0.006 3.994 12 C -0.019 4.019 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.186 1.186 21 C -0.017 4.017 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.214 0.786 26 H 0.190 0.810 27 H 0.259 0.741 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.022 0.978 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.212 8.357 12.594 20.076 hybrid contribution -0.095 -0.474 -1.242 1.333 sum -13.307 7.883 11.353 19.186 Atomic orbital electron populations 1.20861 0.86536 1.05040 1.04151 1.21450 1.00047 0.93220 1.00955 1.23728 0.89440 0.99625 0.88549 1.67874 1.09757 1.30667 1.13859 1.22739 1.01167 0.86481 0.87804 1.31781 1.09068 1.20438 1.20633 1.00917 0.73012 0.73030 0.72027 1.93550 1.41365 1.85142 1.77240 1.93537 1.69203 1.57019 1.77110 1.55329 1.65823 1.35199 1.30630 1.21328 0.93502 0.92542 0.92018 1.19161 0.95859 0.95390 0.91495 1.21565 1.32601 0.99979 1.04134 0.91497 1.25893 0.97546 0.96484 0.99465 1.70077 1.46719 1.17243 1.22937 0.85471 0.78896 0.79287 0.77551 1.19991 1.20903 1.18619 1.21611 0.91138 1.01001 0.87965 0.89433 0.90038 0.88764 0.78570 0.81040 0.74070 0.91698 0.91120 0.97844 0.97224 0.92714 0.81608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.04 71.24 0.72 -0.32 16 2 C -0.15 -2.71 5.90 -19.77 -0.12 -2.82 16 3 C 0.14 2.72 10.86 84.68 0.92 3.64 16 4 N -0.51 -13.26 10.36 -195.85 -2.03 -15.29 16 5 C 0.18 4.86 10.69 84.67 0.90 5.76 16 6 C -0.73 -19.32 5.96 22.36 0.13 -19.19 16 7 S 2.72 81.89 5.75 -56.49 -0.32 81.57 16 8 O -0.98 -35.19 16.78 -128.00 -2.15 -37.34 16 9 O -0.98 -31.43 17.36 -128.00 -2.22 -33.65 16 10 N -1.11 -35.48 6.00 -187.49 -1.12 -36.60 16 11 C 0.13 5.04 6.16 86.38 0.53 5.57 16 12 C 0.02 0.97 5.11 29.85 0.15 1.12 16 13 C -0.54 -29.42 9.11 25.60 0.23 -29.19 16 14 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 15 C 0.00 0.25 5.46 84.66 0.46 0.72 16 16 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 17 Si 0.96 42.93 29.54 68.60 2.03 44.96 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.01 0.20 9.33 22.47 0.21 0.41 16 22 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 0.67 8.10 -2.39 -0.02 0.65 16 24 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 25 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 26 H 0.17 4.56 7.63 -2.91 -0.02 4.54 16 27 H 0.42 12.53 8.65 -96.75 -0.84 11.69 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 2.71 7.75 -2.39 -0.02 2.69 16 30 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.17 3.00 7.71 -2.91 -0.02 2.97 16 Total: -1.00 -71.18 303.63 -1.10 -72.28 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.29 Total: 12.67 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 4.15 Total: -34.29 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -2.87 Total: -106.20 kcal Atomic # 8 Polarization: -66.62 SS G_CDS: -4.37 Total: -70.99 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 81.89 SS G_CDS: -0.32 Total: 81.57 kcal Total: -71.18 -1.10 -72.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309395236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.837 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds