Wall clock time and date at job start Mon Mar 30 2020 01:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47181 * 2 1 4 4 C 1.46507 * 120.00009 * 269.99352 * 3 2 1 5 5 C 1.50700 * 109.47448 * 270.00630 * 4 3 2 6 6 H 1.08004 * 119.99583 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99882 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99953 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47063 * 119.99781 * 9 7 5 12 12 H 1.48499 * 109.47192 * 240.00132 * 9 7 5 13 13 C 1.34784 * 120.00302 * 90.00255 * 3 2 1 14 14 O 1.21278 * 119.99820 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99503 * 359.97438 * 13 3 2 16 16 N 1.46507 * 109.46822 * 180.02562 * 15 13 3 17 17 C 1.36318 * 121.37966 * 270.25674 * 16 15 13 18 18 C 1.32566 * 116.70193 * 180.31458 * 17 16 15 19 19 S 1.77229 * 105.32429 * 359.72182 * 18 17 16 20 20 C 1.34244 * 121.38149 * 90.02593 * 16 15 13 21 21 O 1.21833 * 127.05447 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.47200 * 300.00760 * 1 2 3 23 23 H 1.09004 * 109.47123 * 59.99810 * 1 2 3 24 24 H 1.08998 * 109.47740 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47200 * 239.99240 * 2 1 3 26 26 H 1.09000 * 109.46578 * 119.99701 * 2 1 3 27 27 H 1.09000 * 109.46442 * 30.00710 * 4 3 2 28 28 H 1.09001 * 109.46954 * 150.00117 * 4 3 2 29 29 H 0.97006 * 119.99739 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47042 * 60.00996 * 15 13 3 31 31 H 1.08994 * 109.47985 * 300.00002 * 15 13 3 32 32 H 1.07997 * 121.64714 * 0.02562 * 17 16 15 33 33 H 1.08001 * 127.33242 * 179.74232 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2306 -1.0957 7 6 4.1492 2.3894 -2.8780 8 7 3.3490 3.1247 -3.6186 9 14 5.9136 2.0963 -3.4169 10 1 6.6016 1.2420 -2.4156 11 1 5.9216 1.4167 -4.7371 12 1 6.6206 3.3977 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3083 2.2041 3.5858 17 6 3.5604 2.2548 4.1224 18 6 3.7426 3.0955 5.1311 19 16 2.1697 3.8724 5.3832 20 6 1.3789 3.0141 4.1170 21 8 0.2135 3.1167 3.7768 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0957 3.1410 -1.1385 29 1 3.6751 3.5151 -4.4445 30 1 2.6213 0.4187 2.5302 31 1 0.9433 1.0125 2.5299 32 1 4.3631 1.6372 3.7474 33 1 4.6552 3.2699 5.6817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318733972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:04 Heat of formation + Delta-G solvation = -30.010778 kcal Electronic energy + Delta-G solvation = -18725.803445 eV Core-core repulsion = 15686.147693 eV Total energy + Delta-G solvation = -3039.655752 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91443 -38.80409 -37.17174 -35.41774 -32.95637 -31.83256 -30.19698 -28.64995 -26.78090 -24.46190 -23.13788 -22.65316 -20.80296 -18.79755 -18.49749 -17.22380 -16.91018 -16.46127 -15.54023 -15.24062 -14.97360 -14.71361 -14.34159 -14.16555 -13.67617 -13.51433 -13.21416 -12.74630 -12.22842 -12.07184 -11.94039 -11.64705 -11.27448 -11.19796 -10.97060 -10.81933 -10.63006 -10.21051 -10.02347 -9.87399 -9.69548 -8.96322 -8.50153 -7.97337 -7.80702 -6.10578 -4.16068 1.00171 1.47851 1.82362 2.25549 2.82857 3.16164 3.24887 3.32800 3.35470 3.79027 4.38217 4.68604 4.82905 4.84670 5.08585 5.24103 5.26520 5.35017 5.39936 5.53710 5.68312 5.93105 6.05390 6.14847 6.42605 6.71710 6.94352 7.36014 7.37720 7.42903 7.84618 8.15068 8.24353 8.77330 8.92483 9.49093 10.97691 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.005446 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.156660 B = 5140.448624 C = 5824.251820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.104 3.896 3 N -0.591 5.591 4 C 0.246 3.754 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.490 3.510 14 O -0.527 6.527 15 C 0.081 3.919 16 N -0.518 5.518 17 C 0.089 3.911 18 C -0.240 4.240 19 S -0.006 6.006 20 C 0.487 3.513 21 O -0.474 6.474 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.180 0.820 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.827 -7.461 15.394 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.274 3.726 14 O -0.404 6.404 15 C -0.048 4.048 16 N -0.237 5.237 17 C -0.040 4.040 18 C -0.378 4.378 19 S 0.234 5.766 20 C 0.169 3.831 21 O -0.354 6.354 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.197 0.803 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.824 -5.771 15.810 16.929 hybrid contribution 1.520 -1.162 -1.500 2.431 sum -0.304 -6.933 14.310 15.904 Atomic orbital electron populations 1.22245 0.96480 1.01651 1.02667 1.21486 0.93795 0.83918 1.02833 1.48261 1.63264 1.13348 1.07478 1.19326 0.96464 0.93690 0.77781 1.21420 0.96764 1.32127 1.06337 0.92427 1.24946 0.97926 0.94863 0.96376 1.69943 1.35630 1.33285 1.14297 0.86431 0.84486 0.78067 0.78344 1.19834 1.20900 1.20849 1.20363 0.79616 0.87428 0.85176 1.90723 1.45327 1.17558 1.86762 1.21909 1.04983 0.92711 0.85204 1.45740 1.09394 1.37463 1.31102 1.20821 0.87358 1.00873 0.94996 1.25021 1.01343 1.05151 1.06324 1.84975 1.05411 1.48660 1.37528 1.21559 0.89099 0.84266 0.88164 1.90947 1.14080 1.65734 1.64607 0.92957 0.91804 0.91900 0.89467 0.91858 0.94743 0.93884 0.92673 0.86531 0.86454 0.80295 0.79117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.10 1.53 5.93 -4.05 -0.02 1.51 16 3 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.49 9.93 7.74 -10.99 -0.09 9.84 16 14 O -0.53 -13.31 16.01 5.56 0.09 -13.22 16 15 C 0.08 1.16 4.65 -5.19 -0.02 1.14 16 16 N -0.52 -7.68 2.09 -123.22 -0.26 -7.94 16 17 C 0.09 1.04 10.52 -17.47 -0.18 0.86 16 18 C -0.24 -2.52 11.55 28.82 0.33 -2.19 16 19 S -0.01 -0.09 22.97 -107.50 -2.47 -2.56 16 20 C 0.49 8.21 8.27 53.82 0.45 8.66 16 21 O -0.47 -9.42 17.55 5.07 0.09 -9.34 16 22 H 0.05 0.68 7.22 -51.93 -0.37 0.31 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 26 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 27 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 30 H 0.12 1.19 7.33 -51.93 -0.38 0.81 16 31 H 0.12 1.56 6.84 -51.93 -0.36 1.21 16 32 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -35.56 304.04 -6.19 -41.75 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.91 Total: -2.60 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 0.39 Total: 10.99 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.05 Total: -46.01 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.18 Total: -22.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.47 Total: -2.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.56 -6.19 -41.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318733972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.740 kcal (2) G-P(sol) polarization free energy of solvation -35.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds