Wall clock time and date at job start Mon Mar 30 2020 01:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47181 * 2 1 4 4 C 1.46507 * 120.00009 * 269.99352 * 3 2 1 5 5 C 1.50700 * 109.47448 * 270.00630 * 4 3 2 6 6 H 1.08004 * 119.99583 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99882 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99953 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99824 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47136 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47063 * 119.99781 * 9 7 5 12 12 H 1.48499 * 109.47192 * 240.00132 * 9 7 5 13 13 C 1.34784 * 120.00302 * 90.00255 * 3 2 1 14 14 O 1.21278 * 119.99820 * 179.97438 * 13 3 2 15 15 C 1.50693 * 119.99503 * 359.97438 * 13 3 2 16 16 N 1.46507 * 109.46822 * 180.02562 * 15 13 3 17 17 C 1.36318 * 121.37966 * 270.25674 * 16 15 13 18 18 C 1.32566 * 116.70193 * 180.31458 * 17 16 15 19 19 S 1.77229 * 105.32429 * 359.72182 * 18 17 16 20 20 C 1.34244 * 121.38149 * 90.02593 * 16 15 13 21 21 O 1.21833 * 127.05447 * 0.02562 * 20 16 15 22 22 H 1.09000 * 109.47200 * 300.00760 * 1 2 3 23 23 H 1.09004 * 109.47123 * 59.99810 * 1 2 3 24 24 H 1.08998 * 109.47740 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47200 * 239.99240 * 2 1 3 26 26 H 1.09000 * 109.46578 * 119.99701 * 2 1 3 27 27 H 1.09000 * 109.46442 * 30.00710 * 4 3 2 28 28 H 1.09001 * 109.46954 * 150.00117 * 4 3 2 29 29 H 0.97006 * 119.99739 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47042 * 60.00996 * 15 13 3 31 31 H 1.08994 * 109.47985 * 300.00002 * 15 13 3 32 32 H 1.07997 * 121.64714 * 0.02562 * 17 16 15 33 33 H 1.08001 * 127.33242 * 179.74232 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3429 1.2306 -1.0957 7 6 4.1492 2.3894 -2.8780 8 7 3.3490 3.1247 -3.6186 9 14 5.9136 2.0963 -3.4169 10 1 6.6016 1.2420 -2.4156 11 1 5.9216 1.4167 -4.7371 12 1 6.6206 3.3977 -3.5257 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9914 1.3063 2.4722 16 7 2.3083 2.2041 3.5858 17 6 3.5604 2.2548 4.1224 18 6 3.7426 3.0955 5.1311 19 16 2.1697 3.8724 5.3832 20 6 1.3789 3.0141 4.1170 21 8 0.2135 3.1167 3.7768 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 1.5818 1.6876 -2.0284 28 1 2.0957 3.1410 -1.1385 29 1 3.6751 3.5151 -4.4445 30 1 2.6213 0.4187 2.5302 31 1 0.9433 1.0125 2.5299 32 1 4.3631 1.6372 3.7474 33 1 4.6552 3.2699 5.6817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318733972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:03 Heat of formation + Delta-G solvation = -55.032173 kcal Electronic energy + Delta-G solvation = -18726.888455 eV Core-core repulsion = 15686.147693 eV Total energy + Delta-G solvation = -3040.740761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10135 -40.33414 -38.38045 -37.03685 -34.97298 -32.99643 -31.64964 -30.01645 -28.47932 -25.79925 -24.73796 -24.04165 -21.96634 -20.20325 -19.61660 -18.71343 -18.44796 -18.17001 -17.07856 -16.67366 -16.33233 -16.21617 -15.79059 -15.26621 -14.83422 -14.76212 -14.59252 -14.41962 -13.72936 -13.40750 -13.28404 -13.20683 -13.01420 -12.70419 -12.52809 -12.18864 -12.17383 -11.94056 -11.70523 -11.24566 -11.15215 -10.67372 -10.37646 -9.53614 -9.03185 -8.24153 -6.39566 -0.11919 0.45779 0.87103 1.15704 1.37027 1.39430 1.51062 1.64400 1.77561 2.27270 2.42770 3.06336 3.48874 3.73219 3.87540 4.01622 4.19028 4.37745 4.49944 4.59015 4.63843 4.87414 4.93815 5.00736 5.11990 5.18281 5.35487 5.53683 5.67610 5.78776 6.02047 6.22310 6.62748 6.71873 7.21626 7.36325 8.83913 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.005446 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.156660 B = 5140.448624 C = 5824.251820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.096 3.904 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.538 4.538 6 H 0.062 0.938 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.285 1.285 13 C 0.481 3.519 14 O -0.590 6.590 15 C 0.093 3.907 16 N -0.521 5.521 17 C 0.066 3.934 18 C -0.216 4.216 19 S 0.000 6.000 20 C 0.460 3.540 21 O -0.526 6.526 22 H 0.051 0.949 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.022 0.978 28 H -0.012 1.012 29 H 0.266 0.734 30 H 0.171 0.829 31 H 0.129 0.871 32 H 0.215 0.785 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -9.896 17.082 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.025 4.025 3 N -0.327 5.327 4 C 0.140 3.860 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.796 3.204 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.211 1.211 13 C 0.268 3.732 14 O -0.471 6.471 15 C -0.035 4.035 16 N -0.240 5.240 17 C -0.061 4.061 18 C -0.353 4.353 19 S 0.241 5.759 20 C 0.144 3.856 21 O -0.410 6.410 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.120 0.880 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.039 0.961 28 H 0.007 0.993 29 H 0.075 0.925 30 H 0.188 0.812 31 H 0.147 0.853 32 H 0.232 0.768 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.408 -8.268 17.538 19.394 hybrid contribution 0.838 -0.362 -1.966 2.168 sum 1.245 -8.631 15.572 17.847 Atomic orbital electron populations 1.22196 0.95227 1.03697 1.01268 1.21874 0.94822 0.80887 1.04956 1.48272 1.63225 1.15363 1.05886 1.18730 0.95825 0.91166 0.80252 1.21712 0.97451 1.31975 1.06476 0.91972 1.25942 1.02651 0.94432 0.96494 1.70084 1.37941 1.34385 1.14855 0.85298 0.78629 0.77941 0.78508 1.18301 1.19655 1.21128 1.21439 0.77987 0.86930 0.86869 1.90683 1.48099 1.20400 1.87873 1.21965 1.06952 0.93150 0.81459 1.45884 1.10208 1.37111 1.30801 1.21457 0.86880 1.02257 0.95522 1.25672 1.00860 1.03064 1.05673 1.84951 1.07288 1.48099 1.35595 1.22105 0.89162 0.85065 0.89243 1.90902 1.15936 1.67541 1.66611 0.93002 0.94605 0.88028 0.90056 0.86921 0.96050 0.99345 0.92483 0.81216 0.85314 0.76834 0.74976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 10.24 71.98 0.74 -3.34 16 2 C 0.10 2.66 5.93 86.38 0.51 3.17 16 3 N -0.60 -24.37 2.46 -826.16 -2.03 -26.40 16 4 C 0.26 14.11 5.16 85.63 0.44 14.55 16 5 C -0.54 -30.16 9.39 25.60 0.24 -29.92 16 6 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 7 C 0.00 0.19 5.46 84.65 0.46 0.66 16 8 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.48 19.43 7.74 87.65 0.68 20.11 16 14 O -0.59 -30.78 16.01 -3.02 -0.05 -30.83 16 15 C 0.09 2.44 4.65 85.63 0.40 2.84 16 16 N -0.52 -14.54 2.09 -662.21 -1.39 -15.92 16 17 C 0.07 1.32 10.52 82.84 0.87 2.19 16 18 C -0.22 -3.76 11.55 66.67 0.77 -2.99 16 19 S 0.00 -0.01 22.97 -56.49 -1.30 -1.31 16 20 C 0.46 15.48 8.27 129.87 1.07 16.56 16 21 O -0.53 -21.63 17.55 -4.77 -0.08 -21.72 16 22 H 0.05 1.28 7.22 -2.39 -0.02 1.27 16 23 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 2.36 8.07 -2.39 -0.02 2.34 16 26 H 0.11 2.01 6.44 -2.39 -0.02 1.99 16 27 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 28 H -0.01 -0.74 7.42 -2.39 -0.02 -0.76 16 29 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 30 H 0.17 2.58 7.33 -2.39 -0.02 2.57 16 31 H 0.13 3.15 6.84 -2.39 -0.02 3.13 16 32 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.23 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -84.31 304.04 4.77 -79.54 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.12 Total: 3.39 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 6.19 Total: 23.83 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -3.13 Total: -98.76 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -0.13 Total: -52.55 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.30 Total: -1.31 kcal Total: -84.31 4.77 -79.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318733972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.508 kcal (2) G-P(sol) polarization free energy of solvation -84.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds