Wall clock time and date at job start Mon Mar 30 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48499 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47322 * 300.00010 * 3 2 1 6 6 H 1.48496 * 109.47157 * 60.00387 * 3 2 1 7 7 C 1.37878 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47585 * 179.97438 * 9 7 2 11 11 S 1.81390 * 109.47570 * 179.97438 * 10 9 7 12 12 O 1.42105 * 109.47000 * 296.39097 * 11 10 9 13 13 C 1.81403 * 103.00355 * 179.97438 * 11 10 9 14 14 C 1.50691 * 109.47243 * 179.97438 * 13 11 10 15 15 N 1.31076 * 126.66426 * 270.17054 * 14 13 11 16 16 N 1.28841 * 107.99576 * 180.24518 * 15 14 13 17 17 N 1.28743 * 109.39224 * 359.75396 * 16 15 14 18 18 N 1.29018 * 108.81210 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.43957 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.49632 * 300.02448 * 19 18 17 21 21 C 1.53002 * 60.02940 * 107.47827 * 20 19 18 22 22 H 0.97001 * 119.99473 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47155 * 59.99786 * 9 7 2 24 24 H 1.09007 * 109.47100 * 300.00449 * 9 7 2 25 25 H 1.09007 * 109.46751 * 59.99603 * 10 9 7 26 26 H 1.09004 * 109.46814 * 300.00271 * 10 9 7 27 27 H 1.09006 * 109.46361 * 59.99993 * 13 11 10 28 28 H 1.08999 * 109.47145 * 300.00341 * 13 11 10 29 29 H 1.08999 * 115.56079 * 154.33923 * 19 18 17 30 30 H 1.09002 * 117.49833 * 214.97932 * 20 19 18 31 31 H 1.09002 * 117.49953 * 359.97438 * 20 19 18 32 32 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 33 33 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3383 -5.2330 -0.0011 12 8 0.5870 -5.3456 1.1999 13 6 2.6649 -6.4702 -0.0035 14 6 2.0633 -7.8518 -0.0025 15 7 1.7498 -8.5683 1.0494 16 7 1.2677 -9.6899 0.6379 17 7 1.2607 -9.7056 -0.6494 18 7 1.7400 -8.5885 -1.0817 19 6 1.9079 -8.1980 -2.4837 20 6 2.8125 -9.0703 -3.3565 21 6 1.2952 -9.1100 -3.5495 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8726 -3.6047 0.8877 26 1 2.8712 -3.6039 -0.8923 27 1 3.2823 -6.3425 0.8857 28 1 3.2798 -6.3419 -0.8943 29 1 1.9048 -7.1252 -2.6767 30 1 3.4045 -8.5713 -4.1238 31 1 3.2830 -9.9344 -2.8875 32 1 0.8890 -8.6374 -4.4437 33 1 0.7675 -10.0002 -3.2071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320687205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:58 Heat of formation + Delta-G solvation = 103.026350 kcal Electronic energy + Delta-G solvation = -17873.848705 eV Core-core repulsion = 14872.254627 eV Total energy + Delta-G solvation = -3001.594078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.23552 -38.20434 -35.41531 -33.88708 -33.79234 -33.62867 -31.02128 -28.84168 -25.49083 -25.31992 -23.29308 -22.77920 -21.61672 -21.08912 -18.08916 -17.48015 -17.09276 -16.51050 -15.63898 -15.49430 -14.81785 -14.73122 -14.53016 -13.92994 -13.80415 -13.39483 -12.84839 -12.48322 -12.41426 -12.15718 -12.12373 -11.86692 -11.47438 -11.35796 -11.07864 -11.05861 -10.85886 -10.68976 -10.40833 -10.27364 -10.02899 -9.55660 -9.13751 -8.50318 -7.99933 -6.12939 -4.17857 0.92741 1.60246 1.76193 2.32838 2.82781 3.04833 3.23385 3.31612 3.34399 3.67473 3.81182 4.01606 4.12706 4.25629 4.35028 4.37573 4.92149 5.05629 5.15238 5.19663 5.22591 5.37609 5.46707 5.52408 5.65464 5.77267 5.94856 6.09440 6.63393 7.36409 7.48191 7.81544 8.20922 8.55952 8.86990 9.47168 10.97679 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.003948 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.387269 B = 7090.343341 C = 7538.011922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.037 3.963 10 C -0.413 4.413 11 S 1.229 4.771 12 O -0.820 6.820 13 C -0.392 4.392 14 C 0.220 3.780 15 N -0.297 5.297 16 N -0.075 5.075 17 N -0.100 5.100 18 N -0.281 5.281 19 C 0.043 3.957 20 C -0.165 4.165 21 C -0.153 4.153 22 H 0.263 0.737 23 H 0.029 0.971 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.125 0.875 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.122 0.878 31 H 0.105 0.895 32 H 0.122 0.878 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.109 -15.181 -12.563 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.554 4.554 11 S 1.425 4.575 12 O -0.815 6.815 13 C -0.526 4.526 14 C -0.057 4.057 15 N -0.147 5.147 16 N -0.068 5.068 17 N -0.085 5.085 18 N -0.082 5.082 19 C -0.061 4.061 20 C -0.203 4.203 21 C -0.191 4.191 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.186 0.814 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.488 -16.482 -11.840 20.784 hybrid contribution 2.163 1.958 1.334 3.208 sum 6.651 -14.523 -10.506 19.119 Atomic orbital electron populations 1.69965 1.06088 1.26914 1.50029 1.25045 0.94912 0.99419 0.95025 0.86476 0.79989 0.83446 0.77748 1.19700 1.20799 1.20916 1.21146 0.93072 0.90208 1.51582 0.92283 1.18826 0.92966 0.90103 0.98299 1.27625 1.09730 1.11396 1.06630 1.70774 0.86388 0.87294 1.13052 1.93197 1.54843 1.83467 1.49996 1.26680 1.16618 0.99182 1.10111 1.24945 1.00853 0.97443 0.82454 1.75136 1.15443 1.00148 1.23951 1.78627 1.14571 1.13259 1.00389 1.78763 1.16534 1.04874 1.08371 1.47823 1.40601 1.11114 1.08706 1.22526 1.10504 0.99674 0.73357 1.23548 0.94292 1.01600 1.00905 1.23472 0.96122 1.01332 0.98133 0.92725 0.95282 0.95704 0.90192 0.87163 0.85678 0.84231 0.81371 0.86012 0.87689 0.85948 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -13.91 9.11 -34.44 -0.31 -14.23 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.88 4.98 -27.88 -0.14 0.74 16 10 C -0.41 -7.14 5.86 37.16 0.22 -6.92 16 11 S 1.23 17.89 13.14 -107.50 -1.41 16.48 16 12 O -0.82 -18.10 18.14 -35.23 -0.64 -18.74 16 13 C -0.39 -4.41 6.20 36.00 0.22 -4.19 16 14 C 0.22 3.08 7.39 -155.43 -1.15 1.93 16 15 N -0.30 -5.31 12.36 32.70 0.40 -4.91 16 16 N -0.07 -1.30 13.43 60.35 0.81 -0.49 16 17 N -0.10 -1.43 12.69 60.35 0.77 -0.67 16 18 N -0.28 -3.27 3.67 -51.77 -0.19 -3.46 16 19 C 0.04 0.27 6.48 -67.89 -0.44 -0.17 16 20 C -0.17 -0.74 10.45 -26.73 -0.28 -1.02 16 21 C -0.15 -0.73 10.16 -26.69 -0.27 -1.00 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.11 1.50 8.14 -51.92 -0.42 1.07 16 27 H 0.12 1.51 8.14 -51.92 -0.42 1.08 16 28 H 0.14 0.86 7.86 -51.92 -0.41 0.46 16 29 H 0.17 0.49 8.01 -51.93 -0.42 0.08 16 30 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.12 0.73 7.85 -51.93 -0.41 0.32 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -39.15 308.58 -6.30 -45.45 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -4.15 Total: -5.55 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -2.25 Total: -23.34 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 2.53 Total: -34.68 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.64 Total: -18.74 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 17.89 SS G_CDS: -1.41 Total: 16.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -39.15 -6.30 -45.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320687205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.476 kcal (2) G-P(sol) polarization free energy of solvation -39.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds