Wall clock time and date at job start Mon Mar 30 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00129 * 2 1 4 4 H 1.48499 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47322 * 300.00010 * 3 2 1 6 6 H 1.48496 * 109.47157 * 60.00387 * 3 2 1 7 7 C 1.37878 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99917 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47585 * 179.97438 * 9 7 2 11 11 S 1.81390 * 109.47570 * 179.97438 * 10 9 7 12 12 O 1.42105 * 109.47000 * 296.39097 * 11 10 9 13 13 C 1.81403 * 103.00355 * 179.97438 * 11 10 9 14 14 C 1.50691 * 109.47243 * 179.97438 * 13 11 10 15 15 N 1.31076 * 126.66426 * 270.17054 * 14 13 11 16 16 N 1.28841 * 107.99576 * 180.24518 * 15 14 13 17 17 N 1.28743 * 109.39224 * 359.75396 * 16 15 14 18 18 N 1.29018 * 108.81210 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.43957 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.49632 * 300.02448 * 19 18 17 21 21 C 1.53002 * 60.02940 * 107.47827 * 20 19 18 22 22 H 0.97001 * 119.99473 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47155 * 59.99786 * 9 7 2 24 24 H 1.09007 * 109.47100 * 300.00449 * 9 7 2 25 25 H 1.09007 * 109.46751 * 59.99603 * 10 9 7 26 26 H 1.09004 * 109.46814 * 300.00271 * 10 9 7 27 27 H 1.09006 * 109.46361 * 59.99993 * 13 11 10 28 28 H 1.08999 * 109.47145 * 300.00341 * 13 11 10 29 29 H 1.08999 * 115.56079 * 154.33923 * 19 18 17 30 30 H 1.09002 * 117.49833 * 214.97932 * 20 19 18 31 31 H 1.09002 * 117.49953 * 359.97438 * 20 19 18 32 32 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 33 33 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3383 -5.2330 -0.0011 12 8 0.5870 -5.3456 1.1999 13 6 2.6649 -6.4702 -0.0035 14 6 2.0633 -7.8518 -0.0025 15 7 1.7498 -8.5683 1.0494 16 7 1.2677 -9.6899 0.6379 17 7 1.2607 -9.7056 -0.6494 18 7 1.7400 -8.5885 -1.0817 19 6 1.9079 -8.1980 -2.4837 20 6 2.8125 -9.0703 -3.3565 21 6 1.2952 -9.1100 -3.5495 22 1 -0.4849 0.8401 0.0004 23 1 0.6241 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8726 -3.6047 0.8877 26 1 2.8712 -3.6039 -0.8923 27 1 3.2823 -6.3425 0.8857 28 1 3.2798 -6.3419 -0.8943 29 1 1.9048 -7.1252 -2.6767 30 1 3.4045 -8.5713 -4.1238 31 1 3.2830 -9.9344 -2.8875 32 1 0.8890 -8.6374 -4.4437 33 1 0.7675 -10.0002 -3.2071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320687205.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:58 Heat of formation + Delta-G solvation = 72.470457 kcal Electronic energy + Delta-G solvation = -17875.173708 eV Core-core repulsion = 14872.254627 eV Total energy + Delta-G solvation = -3002.919081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.31291 -38.76459 -36.93158 -35.71364 -34.81268 -34.67868 -32.86498 -29.89151 -27.32090 -26.27451 -24.22111 -23.34816 -23.05788 -22.14738 -18.90689 -18.75854 -18.49206 -18.01585 -16.76964 -16.41410 -16.16963 -16.04705 -15.85598 -15.11336 -14.93662 -14.35097 -14.23081 -14.02034 -13.48333 -13.34695 -13.16001 -13.00439 -12.83720 -12.58157 -12.49674 -12.29888 -12.10174 -11.96045 -11.71372 -11.57345 -11.43704 -11.08639 -10.59542 -10.57362 -9.32536 -8.19397 -6.31899 -0.14652 0.49069 0.91106 1.17066 1.42581 1.44413 1.56269 1.64285 2.42480 2.60653 2.64427 2.89761 3.14277 3.19748 3.48000 3.79636 3.90405 4.10992 4.23630 4.32133 4.42478 4.49764 4.58490 4.78000 4.83383 5.04833 5.06299 5.20877 5.29348 5.46955 5.53091 5.79920 6.19112 6.84371 7.38171 7.43431 8.91859 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.031869 B = 0.003948 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.387269 B = 7090.343341 C = 7538.011922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.412 4.412 11 S 1.289 4.711 12 O -0.906 6.906 13 C -0.374 4.374 14 C 0.212 3.788 15 N -0.344 5.344 16 N -0.114 5.114 17 N -0.099 5.099 18 N -0.261 5.261 19 C 0.007 3.993 20 C -0.147 4.147 21 C -0.152 4.152 22 H 0.264 0.736 23 H 0.029 0.971 24 H -0.028 1.028 25 H 0.069 0.931 26 H 0.160 0.840 27 H 0.123 0.877 28 H 0.207 0.793 29 H 0.211 0.789 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -14.817 -15.610 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.007 4.007 10 C -0.551 4.551 11 S 1.488 4.512 12 O -0.901 6.901 13 C -0.511 4.511 14 C -0.066 4.066 15 N -0.195 5.195 16 N -0.107 5.107 17 N -0.085 5.085 18 N -0.064 5.064 19 C -0.094 4.094 20 C -0.186 4.186 21 C -0.189 4.189 22 H 0.073 0.927 23 H 0.047 0.953 24 H -0.010 1.010 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.142 0.858 28 H 0.224 0.776 29 H 0.228 0.772 30 H 0.176 0.824 31 H 0.105 0.895 32 H 0.172 0.828 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.064 -16.093 -14.905 23.045 hybrid contribution 1.404 1.692 2.145 3.072 sum 8.469 -14.401 -12.760 21.022 Atomic orbital electron populations 1.70106 1.07935 1.27858 1.51588 1.26013 0.95717 1.03503 0.94777 0.85390 0.79288 0.78720 0.77594 1.18061 1.19843 1.21500 1.21684 0.93882 0.91475 1.50468 0.91122 1.18701 0.93820 0.92451 0.95770 1.27503 1.08570 1.10485 1.08546 1.69735 0.85548 0.85848 1.10099 1.93074 1.59452 1.84851 1.52756 1.26594 1.15167 0.95895 1.13490 1.25157 1.00917 0.98122 0.82402 1.75015 1.16847 1.01102 1.26566 1.78588 1.16518 1.13959 1.01634 1.78648 1.16161 1.06119 1.07568 1.48227 1.38227 1.09623 1.10323 1.23533 1.12784 1.02358 0.70696 1.23677 0.94224 1.00421 1.00237 1.23616 0.96652 1.00310 0.98326 0.92721 0.95320 1.00963 0.91227 0.82209 0.85818 0.77597 0.77233 0.82433 0.89455 0.82847 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.54 -28.38 9.11 25.60 0.23 -28.15 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.50 4.98 29.85 0.15 1.65 16 10 C -0.41 -13.37 5.86 71.98 0.42 -12.95 16 11 S 1.29 35.59 13.14 -56.49 -0.74 34.85 16 12 O -0.91 -41.25 18.14 -148.98 -2.70 -43.95 16 13 C -0.37 -7.11 6.20 71.23 0.44 -6.67 16 14 C 0.21 5.56 7.39 138.13 1.02 6.58 16 15 N -0.34 -12.46 12.36 -50.45 -0.62 -13.09 16 16 N -0.11 -4.05 13.43 37.01 0.50 -3.55 16 17 N -0.10 -2.80 12.69 37.02 0.47 -2.33 16 18 N -0.26 -5.54 3.67 -317.71 -1.17 -6.71 16 19 C 0.01 0.06 6.48 45.01 0.29 0.35 16 20 C -0.15 -0.69 10.45 30.60 0.32 -0.37 16 21 C -0.15 -0.93 10.16 30.62 0.31 -0.61 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H -0.03 -1.64 8.14 -2.38 -0.02 -1.66 16 25 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.16 3.54 8.14 -2.39 -0.02 3.52 16 27 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.21 1.12 7.86 -2.39 -0.02 1.10 16 29 H 0.21 -0.08 8.01 -2.39 -0.02 -0.09 16 30 H 0.16 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.09 1.04 7.85 -2.39 -0.02 1.02 16 Total: -1.00 -92.87 308.58 2.81 -90.06 By element: Atomic # 1 Polarization: -5.68 SS G_CDS: 1.12 Total: -4.56 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.65 Total: -39.81 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -0.54 Total: -80.76 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -2.70 Total: -43.95 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 35.59 SS G_CDS: -0.74 Total: 34.85 kcal Total: -92.87 2.81 -90.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320687205.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.526 kcal (2) G-P(sol) polarization free energy of solvation -92.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds