Wall clock time and date at job start Mon Mar 30 2020 01:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38616 * 120.44864 * 2 1 4 4 C 1.38574 * 118.39759 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10791 * 359.97438 * 4 3 2 6 6 C 1.31776 * 120.81676 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.12324 * 179.97438 * 6 5 4 8 8 S 1.81393 * 109.47286 * 89.99338 * 7 6 5 9 9 O 1.42096 * 108.57861 * 65.51562 * 8 7 6 10 10 O 1.42105 * 108.57947 * 294.48635 * 8 7 6 11 11 C 1.81399 * 101.92117 * 180.02562 * 8 7 6 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.47353 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99993 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00258 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46904 * 90.00228 * 17 15 13 19 19 H 1.48501 * 109.47483 * 209.99891 * 17 15 13 20 20 H 1.48494 * 109.47201 * 330.00053 * 17 15 13 21 21 N 1.31814 * 121.75431 * 0.26127 * 6 5 4 22 22 H 1.09005 * 109.47439 * 90.00013 * 1 2 3 23 23 H 1.08998 * 109.47847 * 210.00030 * 1 2 3 24 24 H 1.09003 * 109.47543 * 330.00131 * 1 2 3 25 25 H 1.07995 * 120.79881 * 0.02562 * 3 2 1 26 26 H 1.08004 * 120.44806 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.46596 * 329.99236 * 7 6 5 28 28 H 1.09002 * 109.46839 * 209.99860 * 7 6 5 29 29 H 1.09001 * 109.47190 * 299.99865 * 11 8 7 30 30 H 1.09004 * 109.47089 * 59.99998 * 11 8 7 31 31 H 1.09001 * 109.46962 * 300.00183 * 12 11 8 32 32 H 1.09004 * 109.46832 * 60.00020 * 12 11 8 33 33 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5943 1.1454 -0.0005 5 7 4.1963 -0.0333 -0.0005 6 6 3.4956 -1.1493 -0.0005 7 6 4.2204 -2.4705 -0.0011 8 16 4.5121 -3.0009 1.7089 9 8 3.2572 -3.2615 2.3223 10 8 5.4065 -2.0823 2.3216 11 6 5.3776 -4.5771 1.4698 12 6 5.7133 -5.1865 2.8325 13 6 6.4318 -6.4962 2.6339 14 1 6.6297 -6.8576 1.6356 15 6 6.8366 -7.2330 3.7266 16 7 6.5953 -6.7932 4.9423 17 14 7.7278 -8.8561 3.4804 18 1 9.1913 -8.6123 3.4150 19 1 7.4275 -9.7633 4.6171 20 1 7.2734 -9.4832 2.2133 21 7 2.1775 -1.1407 -0.0056 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3635 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6899 2.1418 0.0004 26 1 4.1746 2.0563 -0.0001 27 1 5.1752 -2.3608 -0.5154 28 1 3.6147 -3.2170 -0.5148 29 1 4.7382 -5.2619 0.9127 30 1 6.2984 -4.4050 0.9124 31 1 6.3529 -4.5015 3.3892 32 1 4.7928 -5.3585 3.3903 33 1 6.8797 -7.3118 5.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320687784.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:13 Heat of formation + Delta-G solvation = -31.099629 kcal Electronic energy + Delta-G solvation = -18002.336850 eV Core-core repulsion = 14962.633882 eV Total energy + Delta-G solvation = -3039.702968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30045 -36.45594 -35.51464 -34.77906 -33.87639 -33.71432 -31.17818 -29.72352 -28.49008 -25.62651 -23.79755 -22.69399 -21.37371 -18.44679 -17.93395 -17.05732 -16.67295 -16.04272 -15.72130 -15.60418 -15.03969 -14.87541 -14.48681 -13.86433 -13.50413 -13.38638 -13.21949 -12.81462 -12.58265 -12.48360 -11.74195 -11.53394 -11.46756 -11.22489 -11.05937 -10.96197 -10.92290 -10.68905 -10.36489 -10.34047 -9.74734 -9.50537 -9.44066 -9.09832 -8.47405 -6.09492 -4.15438 0.15610 0.81156 0.87463 3.16274 3.28464 3.34554 3.37147 3.40093 3.50705 3.79275 4.18360 4.24524 4.39627 4.44383 4.65393 4.81931 4.90242 5.03945 5.16492 5.23139 5.25635 5.41773 5.56561 5.66349 5.67585 5.69608 6.15795 6.48665 6.80466 7.36267 7.41705 7.83134 7.85614 8.19304 8.88083 9.49027 11.01452 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047449 B = 0.003897 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.967596 B = 7184.002916 C = 7320.684068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.231 4.231 4 C 0.153 3.847 5 N -0.508 5.508 6 C 0.334 3.666 7 C -0.564 4.564 8 S 2.400 3.600 9 O -0.931 6.931 10 O -0.931 6.931 11 C -0.566 4.566 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.901 3.099 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 N -0.504 5.504 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.151 0.849 26 H 0.174 0.826 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 14.749 -12.818 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.253 4.253 4 C -0.012 4.012 5 N -0.222 5.222 6 C 0.066 3.934 7 C -0.688 4.688 8 S 2.582 3.418 9 O -0.928 6.928 10 O -0.928 6.928 11 C -0.700 4.700 12 C -0.011 4.011 13 C -0.561 4.561 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 N -0.220 5.220 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.169 0.831 26 H 0.192 0.808 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.242 14.340 -11.906 20.804 hybrid contribution 0.315 -0.342 -0.936 1.046 sum -8.926 13.998 -12.842 20.989 Atomic orbital electron populations 1.20825 0.87415 1.04575 1.03733 1.21831 0.97905 0.87958 0.89278 1.22814 0.96647 1.00601 1.05216 1.23313 0.92237 0.96055 0.89639 1.68230 1.41578 0.98664 1.13763 1.21710 0.86544 0.92647 0.92520 1.29503 1.09063 0.99834 1.30413 1.08993 0.76831 0.79471 0.76534 1.93562 1.42590 1.85424 1.71215 1.93565 1.65469 1.62490 1.71238 1.30212 1.12094 1.16170 1.11478 1.19013 0.98638 0.97073 0.86350 1.21014 1.37795 1.04193 0.93065 0.91929 1.25067 0.95942 0.98341 0.95123 1.69962 1.46180 1.38762 0.97849 0.86460 0.79904 0.82975 0.77877 1.20463 1.21025 1.19731 1.68082 1.09025 1.30847 1.14033 0.89565 0.89364 0.89900 0.83119 0.80850 0.82679 0.82721 0.85825 0.85814 0.94530 0.94531 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.22 36.00 0.37 -0.46 16 2 C 0.18 2.06 6.82 -82.24 -0.56 1.50 16 3 C -0.23 -2.18 9.86 -39.32 -0.39 -2.56 16 4 C 0.15 1.68 11.30 -17.20 -0.19 1.49 16 5 N -0.51 -7.59 10.33 -10.73 -0.11 -7.70 16 6 C 0.33 5.24 6.90 -157.19 -1.08 4.16 16 7 C -0.56 -7.85 6.24 36.01 0.22 -7.62 16 8 S 2.40 44.55 4.70 -107.50 -0.51 44.04 16 9 O -0.93 -20.21 18.10 -57.83 -1.05 -21.26 16 10 O -0.93 -20.25 18.10 -57.83 -1.05 -21.29 16 11 C -0.57 -10.69 5.74 37.16 0.21 -10.47 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 N -0.50 -7.63 10.27 -6.99 -0.07 -7.70 16 22 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 25 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 26 H 0.17 1.21 8.06 -52.48 -0.42 0.78 16 27 H 0.16 1.71 8.14 -51.92 -0.42 1.29 16 28 H 0.15 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 30 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -38.36 307.68 -8.59 -46.95 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.19 Total: -1.34 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -1.97 Total: -26.60 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.55 Total: -41.35 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.09 Total: -42.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 44.55 SS G_CDS: -0.51 Total: 44.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -38.36 -8.59 -46.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320687784.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.846 kcal (2) G-P(sol) polarization free energy of solvation -38.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds