Wall clock time and date at job start Mon Mar 30 2020 01:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31809 * 119.12396 * 2 1 4 4 C 1.32313 * 120.81954 * 179.72922 * 3 2 1 5 5 C 1.38624 * 119.10338 * 0.57390 * 4 3 2 6 6 C 1.38574 * 118.39673 * 359.43958 * 5 4 3 7 7 C 1.50703 * 120.44930 * 180.30273 * 6 5 4 8 8 S 1.81402 * 109.47334 * 90.00002 * 7 6 5 9 9 O 1.42105 * 108.57505 * 294.48906 * 8 7 6 10 10 O 1.42089 * 108.57792 * 65.51459 * 8 7 6 11 11 C 1.81404 * 101.92108 * 180.02562 * 8 7 6 12 12 C 1.52992 * 109.47020 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47379 * 179.97438 * 12 11 8 14 14 H 1.08009 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00532 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99775 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46717 * 120.00221 * 17 15 13 20 20 H 1.48502 * 109.46605 * 239.99853 * 17 15 13 21 21 N 1.31789 * 119.12383 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46874 * 269.97291 * 1 2 3 23 23 H 1.08996 * 109.47587 * 29.97672 * 1 2 3 24 24 H 1.09003 * 109.47510 * 149.98054 * 1 2 3 25 25 H 1.07999 * 120.44989 * 180.31173 * 4 3 2 26 26 H 1.08002 * 120.80485 * 179.72100 * 5 4 3 27 27 H 1.08994 * 109.47205 * 210.00199 * 7 6 5 28 28 H 1.09006 * 109.46751 * 329.99943 * 7 6 5 29 29 H 1.09000 * 109.46457 * 299.99839 * 11 8 7 30 30 H 1.08998 * 109.47059 * 59.99451 * 11 8 7 31 31 H 1.09001 * 109.47062 * 299.99995 * 12 11 8 32 32 H 1.09007 * 109.47351 * 59.99875 * 12 11 8 33 33 H 0.97002 * 120.00042 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0054 5 6 4.1809 -0.0001 -0.0011 6 6 3.4713 -1.1904 -0.0011 7 6 4.1961 -2.5116 -0.0011 8 16 4.4870 -3.0418 1.7092 9 8 5.3812 -2.1230 2.3220 10 8 3.2318 -3.3023 2.3221 11 6 5.3526 -4.6181 1.4707 12 6 5.6876 -5.2272 2.8336 13 6 6.4062 -6.5369 2.6356 14 1 6.6045 -6.8985 1.6374 15 6 6.8114 -7.2731 3.7286 16 7 6.5704 -6.8325 4.9441 17 14 7.7027 -8.8963 3.4831 18 1 7.8500 -9.1653 2.0301 19 1 9.0464 -8.8231 4.1112 20 1 6.9208 -9.9905 4.1129 21 7 2.1484 -1.1513 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 3.9905 2.1374 0.0104 26 1 5.2609 -0.0002 -0.0015 27 1 3.5906 -3.2582 -0.5149 28 1 5.1511 -2.4021 -0.5150 29 1 4.7133 -5.3029 0.9135 30 1 6.2736 -4.4462 0.9136 31 1 6.3270 -4.5421 3.3904 32 1 4.7668 -5.3990 3.3911 33 1 6.8551 -7.3507 5.7132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322454477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:35 Heat of formation + Delta-G solvation = -32.664987 kcal Electronic energy + Delta-G solvation = -17995.538880 eV Core-core repulsion = 14955.768033 eV Total energy + Delta-G solvation = -3039.770847 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.28591 -36.57411 -35.63632 -34.84723 -33.92554 -33.61944 -31.24046 -29.75701 -28.43827 -25.68972 -23.82254 -22.67969 -21.42487 -18.54701 -17.92298 -17.10896 -16.73371 -16.04871 -15.72493 -15.51836 -15.19521 -15.04857 -14.53752 -13.90051 -13.52140 -13.44289 -12.89032 -12.83497 -12.55630 -12.51931 -11.80768 -11.65713 -11.59014 -11.48542 -11.11570 -11.09750 -10.98020 -10.51367 -10.41661 -10.35649 -9.78056 -9.55538 -9.47373 -9.14684 -8.52401 -6.14234 -4.20417 0.08363 0.71739 0.93743 3.08770 3.24273 3.31574 3.34605 3.44538 3.51023 3.79960 3.96145 4.18408 4.34559 4.38524 4.63520 4.84115 4.91190 5.16500 5.20746 5.21199 5.31843 5.38534 5.56447 5.61655 5.63147 5.71916 6.18903 6.41363 6.77035 7.30365 7.35388 7.78350 7.87233 8.13945 8.83333 9.44463 10.96670 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047854 B = 0.003869 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.967545 B = 7235.634493 C = 7368.535136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.320 3.680 3 N -0.520 5.520 4 C 0.155 3.845 5 C -0.223 4.223 6 C 0.188 3.812 7 C -0.585 4.585 8 S 2.398 3.602 9 O -0.937 6.937 10 O -0.928 6.928 11 C -0.565 4.565 12 C 0.027 3.973 13 C -0.522 4.522 14 H 0.063 0.937 15 C 0.058 3.942 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.505 5.505 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.175 0.825 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.181 12.869 -12.818 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 N -0.235 5.235 4 C -0.011 4.011 5 C -0.245 4.245 6 C 0.041 3.959 7 C -0.708 4.708 8 S 2.580 3.420 9 O -0.934 6.934 10 O -0.925 6.925 11 C -0.699 4.699 12 C -0.011 4.011 13 C -0.561 4.561 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.527 5.527 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.220 5.220 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.192 0.808 26 H 0.175 0.825 27 H 0.172 0.828 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.434 13.320 -11.905 19.350 hybrid contribution 1.783 -1.269 -0.882 2.360 sum -5.651 12.051 -12.787 18.458 Atomic orbital electron populations 1.20602 0.85295 1.04187 1.04328 1.23341 0.98402 0.83005 0.89973 1.68270 1.10214 1.30383 1.14624 1.23283 0.89580 0.98630 0.89561 1.22874 1.03655 0.93898 1.04094 1.20473 0.89839 0.93441 0.92152 1.29695 1.08793 1.02311 1.30000 1.09036 0.76823 0.79512 0.76583 1.93551 1.65669 1.62736 1.71452 1.93571 1.42379 1.85285 1.71219 1.30206 1.12013 1.16161 1.11506 1.19020 0.98675 0.97130 0.86302 1.21042 1.37798 1.04194 0.93093 0.91892 1.25072 0.95926 0.98352 0.95122 1.69970 1.46195 1.38649 0.97859 0.86405 0.79375 0.83107 0.78341 1.19617 1.20788 1.20763 1.68070 1.08951 1.30956 1.14054 0.89196 0.89535 0.89379 0.80798 0.82539 0.82804 0.83149 0.85800 0.85888 0.94538 0.94510 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.32 36.00 0.37 -0.45 16 2 C 0.32 4.29 7.64 -157.19 -1.20 3.09 16 3 N -0.52 -6.64 10.33 -10.72 -0.11 -6.75 16 4 C 0.16 1.70 11.31 -17.20 -0.19 1.50 16 5 C -0.22 -2.61 9.86 -39.32 -0.39 -3.00 16 6 C 0.19 2.63 6.08 -82.25 -0.50 2.13 16 7 C -0.58 -7.01 6.14 36.01 0.22 -6.79 16 8 S 2.40 41.12 4.70 -107.50 -0.51 40.62 16 9 O -0.94 -18.49 18.10 -57.83 -1.05 -19.54 16 10 O -0.93 -19.47 18.10 -57.83 -1.05 -20.52 16 11 C -0.57 -10.11 5.74 37.15 0.21 -9.90 16 12 C 0.03 0.69 4.98 -27.89 -0.14 0.55 16 13 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 N -0.50 -7.61 10.27 -6.99 -0.07 -7.68 16 22 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.15 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.15 1.20 8.10 -51.92 -0.42 0.78 16 29 H 0.12 1.92 8.14 -51.92 -0.42 1.49 16 30 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -37.13 307.68 -8.65 -45.77 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.19 Total: -1.07 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -2.03 Total: -25.81 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.55 Total: -39.96 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -2.09 Total: -40.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 41.12 SS G_CDS: -0.51 Total: 40.62 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -37.13 -8.65 -45.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322454477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.106 kcal (2) G-P(sol) polarization free energy of solvation -37.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds