Wall clock time and date at job start Mon Mar 30 2020 01:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31809 * 119.12396 * 2 1 4 4 C 1.32313 * 120.81954 * 179.72922 * 3 2 1 5 5 C 1.38624 * 119.10338 * 0.57390 * 4 3 2 6 6 C 1.38574 * 118.39673 * 359.43958 * 5 4 3 7 7 C 1.50703 * 120.44930 * 180.30273 * 6 5 4 8 8 S 1.81402 * 109.47334 * 90.00002 * 7 6 5 9 9 O 1.42105 * 108.57505 * 294.48906 * 8 7 6 10 10 O 1.42089 * 108.57792 * 65.51459 * 8 7 6 11 11 C 1.81404 * 101.92108 * 180.02562 * 8 7 6 12 12 C 1.52992 * 109.47020 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47379 * 179.97438 * 12 11 8 14 14 H 1.08009 * 119.99742 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00532 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99775 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46717 * 120.00221 * 17 15 13 20 20 H 1.48502 * 109.46605 * 239.99853 * 17 15 13 21 21 N 1.31789 * 119.12383 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46874 * 269.97291 * 1 2 3 23 23 H 1.08996 * 109.47587 * 29.97672 * 1 2 3 24 24 H 1.09003 * 109.47510 * 149.98054 * 1 2 3 25 25 H 1.07999 * 120.44989 * 180.31173 * 4 3 2 26 26 H 1.08002 * 120.80485 * 179.72100 * 5 4 3 27 27 H 1.08994 * 109.47205 * 210.00199 * 7 6 5 28 28 H 1.09006 * 109.46751 * 329.99943 * 7 6 5 29 29 H 1.09000 * 109.46457 * 299.99839 * 11 8 7 30 30 H 1.08998 * 109.47059 * 59.99451 * 11 8 7 31 31 H 1.09001 * 109.47062 * 299.99995 * 12 11 8 32 32 H 1.09007 * 109.47351 * 59.99875 * 12 11 8 33 33 H 0.97002 * 120.00042 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1514 0.0000 4 6 3.4710 1.1906 0.0054 5 6 4.1809 -0.0001 -0.0011 6 6 3.4713 -1.1904 -0.0011 7 6 4.1961 -2.5116 -0.0011 8 16 4.4870 -3.0418 1.7092 9 8 5.3812 -2.1230 2.3220 10 8 3.2318 -3.3023 2.3221 11 6 5.3526 -4.6181 1.4707 12 6 5.6876 -5.2272 2.8336 13 6 6.4062 -6.5369 2.6356 14 1 6.6045 -6.8985 1.6374 15 6 6.8114 -7.2731 3.7286 16 7 6.5704 -6.8325 4.9441 17 14 7.7027 -8.8963 3.4831 18 1 7.8500 -9.1653 2.0301 19 1 9.0464 -8.8231 4.1112 20 1 6.9208 -9.9905 4.1129 21 7 2.1484 -1.1513 -0.0005 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8901 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 3.9905 2.1374 0.0104 26 1 5.2609 -0.0002 -0.0015 27 1 3.5906 -3.2582 -0.5149 28 1 5.1511 -2.4021 -0.5150 29 1 4.7133 -5.3029 0.9135 30 1 6.2736 -4.4462 0.9136 31 1 6.3270 -4.5421 3.3904 32 1 4.7668 -5.3990 3.3911 33 1 6.8551 -7.3507 5.7132 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322454477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:34 Heat of formation + Delta-G solvation = -61.372851 kcal Electronic energy + Delta-G solvation = -17996.783747 eV Core-core repulsion = 14955.768033 eV Total energy + Delta-G solvation = -3041.015714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19192 -38.04426 -37.09601 -35.90292 -35.75962 -34.48912 -33.13103 -30.71955 -29.28916 -27.59379 -24.78328 -23.85301 -23.02207 -19.93117 -18.89896 -18.84594 -17.79982 -17.50204 -17.10083 -16.67024 -16.44953 -16.27897 -16.02936 -15.19217 -14.73324 -14.48694 -14.30886 -13.78484 -13.71986 -13.63300 -13.23697 -13.15148 -13.08439 -12.93212 -12.73838 -12.59717 -12.22124 -12.05925 -11.98701 -11.76966 -11.50255 -11.01029 -10.64489 -10.46210 -10.38427 -8.24732 -6.39118 -1.21597 -0.19655 -0.00319 1.42659 1.43372 1.56685 1.80934 2.37247 2.43234 2.60462 2.85474 3.01955 3.03585 3.09312 3.32728 3.71696 3.97104 4.04951 4.06633 4.20457 4.36740 4.39991 4.54493 4.67512 4.80660 4.83774 4.99996 5.30828 5.31380 5.36196 5.70428 5.86994 6.06460 6.76218 6.94815 7.31465 8.87922 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.047854 B = 0.003869 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.967545 B = 7235.634493 C = 7368.535136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.299 3.701 3 N -0.530 5.530 4 C 0.152 3.848 5 C -0.223 4.223 6 C 0.153 3.847 7 C -0.549 4.549 8 S 2.401 3.599 9 O -0.973 6.973 10 O -0.981 6.981 11 C -0.566 4.566 12 C 0.017 3.983 13 C -0.537 4.537 14 H 0.082 0.918 15 C -0.007 4.007 16 N -0.937 5.937 17 Si 0.976 3.024 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.281 1.281 21 N -0.534 5.534 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.093 0.907 25 H 0.215 0.785 26 H 0.186 0.814 27 H 0.179 0.821 28 H 0.201 0.799 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.006 0.994 32 H 0.001 0.999 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.311 13.158 -15.745 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.032 3.968 3 N -0.246 5.246 4 C -0.013 4.013 5 C -0.246 4.246 6 C 0.007 3.993 7 C -0.678 4.678 8 S 2.590 3.410 9 O -0.970 6.970 10 O -0.978 6.978 11 C -0.698 4.698 12 C -0.021 4.021 13 C -0.576 4.576 14 H 0.100 0.900 15 C -0.205 4.205 16 N -0.577 5.577 17 Si 0.799 3.201 18 H -0.175 1.175 19 H -0.205 1.205 20 H -0.206 1.206 21 N -0.250 5.250 22 H 0.110 0.890 23 H 0.122 0.878 24 H 0.112 0.888 25 H 0.231 0.769 26 H 0.204 0.796 27 H 0.197 0.803 28 H 0.219 0.781 29 H 0.169 0.831 30 H 0.176 0.824 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.550 13.571 -14.785 21.111 hybrid contribution 1.468 -1.199 -0.050 1.896 sum -5.082 12.372 -14.835 19.974 Atomic orbital electron populations 1.20718 0.83469 1.05364 1.04792 1.23960 0.99844 0.82981 0.89974 1.68363 1.11303 1.30091 1.14809 1.24039 0.89174 1.00211 0.87914 1.23307 1.05210 0.93352 1.02693 1.20864 0.90077 0.94754 0.93629 1.29359 1.11944 1.02351 1.24160 1.08419 0.75232 0.78600 0.78782 1.93499 1.66255 1.62999 1.74287 1.93508 1.43955 1.85773 1.74539 1.30066 1.14663 1.17391 1.07704 1.18850 0.96385 0.96907 0.89959 1.21606 1.37201 1.04871 0.93943 0.89983 1.26164 0.96934 1.02630 0.94775 1.70130 1.47925 1.40594 0.99011 0.85238 0.77728 0.77849 0.79255 1.17510 1.20471 1.20641 1.68081 1.09871 1.31946 1.15104 0.88964 0.87754 0.88814 0.76867 0.79623 0.80318 0.78121 0.83128 0.82367 0.97561 0.98051 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 10.32 71.23 0.74 -0.82 16 2 C 0.30 7.70 7.64 138.75 1.06 8.76 16 3 N -0.53 -12.62 10.33 -187.84 -1.94 -14.56 16 4 C 0.15 2.91 11.31 84.71 0.96 3.87 16 5 C -0.22 -4.56 9.86 22.44 0.22 -4.34 16 6 C 0.15 3.91 6.08 42.56 0.26 4.17 16 7 C -0.55 -11.30 6.14 71.24 0.44 -10.86 16 8 S 2.40 81.24 4.70 -56.49 -0.27 80.98 16 9 O -0.97 -38.60 18.10 -127.37 -2.30 -40.91 16 10 O -0.98 -42.56 18.10 -127.37 -2.30 -44.87 16 11 C -0.57 -19.59 5.74 71.98 0.41 -19.17 16 12 C 0.02 0.90 4.98 29.84 0.15 1.05 16 13 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 14 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 15 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 16 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 17 Si 0.98 42.79 29.54 68.60 2.03 44.81 16 18 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 N -0.53 -15.42 10.27 -176.03 -1.81 -17.23 16 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 26 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 27 H 0.18 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.20 2.07 8.10 -2.39 -0.02 2.05 16 29 H 0.15 4.33 8.14 -2.39 -0.02 4.31 16 30 H 0.16 4.27 8.14 -2.39 -0.02 4.25 16 31 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -85.55 307.68 -0.28 -85.83 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.11 Total: 9.25 kcal Atomic # 6 Polarization: -51.19 SS G_CDS: 4.93 Total: -46.26 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -3.46 Total: -88.84 kcal Atomic # 8 Polarization: -81.16 SS G_CDS: -4.61 Total: -85.77 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 81.24 SS G_CDS: -0.27 Total: 80.98 kcal Total: -85.55 -0.28 -85.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322454477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.456 kcal (2) G-P(sol) polarization free energy of solvation -85.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds