Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 N 1.30266 * 126.28530 * 90.02248 * 11 10 9 13 13 N 1.28664 * 109.38483 * 179.97438 * 12 11 10 14 14 C 1.30282 * 109.37501 * 0.02562 * 13 12 11 15 15 C 1.50706 * 126.27827 * 180.02562 * 14 13 12 16 16 C 1.53177 * 109.54120 * 59.52991 * 15 14 13 17 17 C 1.53101 * 109.16254 * 183.14940 * 16 15 14 18 18 O 1.42905 * 109.40819 * 57.60856 * 17 16 15 19 19 C 1.42901 * 114.10169 * 298.83871 * 18 17 16 20 20 C 1.53094 * 109.41228 * 61.16238 * 19 18 17 21 21 O 1.34356 * 107.43490 * 359.75579 * 14 13 12 22 22 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 25 25 H 1.08997 * 109.54211 * 179.79697 * 15 14 13 26 26 H 1.09000 * 109.52548 * 303.05530 * 16 15 14 27 27 H 1.09002 * 109.52405 * 63.24367 * 16 15 14 28 28 H 1.08995 * 109.47603 * 297.62789 * 17 16 15 29 29 H 1.08999 * 109.47603 * 177.59243 * 17 16 15 30 30 H 1.08996 * 109.48280 * 301.18496 * 19 18 17 31 31 H 1.08991 * 109.48083 * 181.14448 * 19 18 17 32 32 H 1.08997 * 109.52123 * 182.48615 * 20 19 18 33 33 H 1.09007 * 109.57018 * 62.32534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 7 1.7175 -6.0246 -1.0505 13 7 1.2860 -7.1777 -0.6770 14 6 1.2653 -7.2306 0.6246 15 6 0.8265 -8.4039 1.4625 16 6 1.7009 -9.6195 1.1399 17 6 1.1981 -10.8260 1.9370 18 8 -0.1744 -11.0662 1.6197 19 6 -1.0466 -9.9816 1.9439 20 6 -0.6340 -8.7412 1.1471 21 8 1.7125 -6.0494 1.0827 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7315 -0.8895 24 1 3.1244 -3.7315 0.8905 25 1 0.9230 -8.1538 2.5190 26 1 1.6426 -9.8374 0.0735 27 1 2.7346 -9.4075 1.4132 28 1 1.2946 -10.6228 3.0035 29 1 1.7900 -11.7042 1.6790 30 1 -0.9795 -9.7674 3.0105 31 1 -2.0718 -10.2516 1.6909 32 1 -1.2701 -7.9011 1.4257 33 1 -0.7397 -8.9404 0.0806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322685114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = -23.822550 kcal Electronic energy + Delta-G solvation = -17829.009761 eV Core-core repulsion = 14789.622350 eV Total energy + Delta-G solvation = -3039.387410 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.95185 -39.61254 -35.86413 -34.97701 -32.60299 -31.95795 -31.46181 -28.16910 -25.84261 -25.44040 -23.90017 -22.80433 -22.13797 -20.36244 -17.95985 -17.17975 -17.13015 -16.41073 -16.26822 -15.14181 -15.04803 -14.93482 -14.53994 -14.28707 -14.01923 -13.61879 -12.89380 -12.86739 -12.73019 -12.11652 -11.84943 -11.63994 -11.57414 -11.30164 -11.20183 -11.12721 -10.97210 -10.74232 -10.62574 -10.19990 -9.94320 -9.20246 -9.13732 -8.53945 -6.76955 -6.38085 -4.13214 1.32875 2.37469 2.54160 3.15682 3.16757 3.21676 3.38467 3.56316 3.89627 4.06411 4.30289 4.38289 4.62531 4.66300 4.75548 4.89243 4.99133 5.03341 5.17578 5.20407 5.25348 5.36047 5.44212 5.47755 5.66225 5.69909 5.78530 5.81333 5.90121 6.03451 6.09222 6.86192 7.45442 8.20069 8.59848 9.07510 10.69897 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050947 B = 0.003435 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.458079 B = 8150.301757 C = 8371.186980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.080 0.920 9 S -0.085 6.085 10 C -0.039 4.039 11 C 0.210 3.790 12 N -0.287 5.287 13 N -0.279 5.279 14 C 0.145 3.855 15 C 0.014 3.986 16 C -0.149 4.149 17 C 0.065 3.935 18 O -0.381 6.381 19 C 0.065 3.935 20 C -0.150 4.150 21 O -0.220 6.220 22 H 0.271 0.729 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 -17.888 6.220 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.751 3.249 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.676 4.676 8 H 0.098 0.902 9 S 0.142 5.858 10 C -0.187 4.187 11 C 0.000 4.000 12 N -0.134 5.134 13 N -0.126 5.126 14 C -0.067 4.067 15 C -0.006 4.006 16 C -0.187 4.187 17 C -0.012 4.012 18 O -0.300 6.300 19 C -0.012 4.012 20 C -0.189 4.189 21 O -0.100 6.100 22 H 0.081 0.919 23 H 0.131 0.869 24 H 0.116 0.884 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.464 -18.473 4.894 19.116 hybrid contribution 2.063 2.115 1.286 3.222 sum 2.527 -16.358 6.179 17.668 Atomic orbital electron populations 1.69992 1.06042 1.27972 1.46199 1.25033 0.95136 0.99244 0.94081 0.86115 0.79182 0.80600 0.79028 1.19675 1.20696 1.19744 1.22670 0.94833 0.90074 1.60005 0.90237 1.85183 1.05436 0.98254 1.96956 1.21950 1.04266 0.85778 1.06716 1.27479 0.97109 0.96318 0.79127 1.74450 1.15651 0.98256 1.25070 1.74280 1.15894 1.13359 1.09020 1.27614 0.99925 0.87175 0.91945 1.19645 0.96310 0.86966 0.97645 1.22302 0.99369 0.93627 1.03385 1.22584 0.82867 0.97779 0.98002 1.87959 1.17281 1.39696 1.85020 1.22597 0.94535 0.86078 0.97998 1.22314 0.93719 0.99403 1.03422 1.84785 1.63090 1.23577 1.38505 0.91870 0.86946 0.88440 0.88152 0.89266 0.90243 0.92777 0.88181 0.92720 0.88054 0.89884 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.14 13.22 55.49 0.73 -24.41 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.53 -14.40 9.50 30.94 0.29 -14.11 16 8 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.08 -2.17 21.42 -107.50 -2.30 -4.47 16 10 C -0.04 -0.78 6.30 36.01 0.23 -0.56 16 11 C 0.21 4.15 7.73 -12.94 -0.10 4.05 16 12 N -0.29 -5.88 12.22 32.55 0.40 -5.48 16 13 N -0.28 -5.12 12.22 32.55 0.40 -4.72 16 14 C 0.15 2.30 7.00 -12.93 -0.09 2.21 16 15 C 0.01 0.16 2.75 -91.59 -0.25 -0.09 16 16 C -0.15 -1.37 5.40 -26.59 -0.14 -1.51 16 17 C 0.06 0.49 6.84 37.21 0.25 0.74 16 18 O -0.38 -3.67 10.76 -35.23 -0.38 -4.05 16 19 C 0.06 0.52 6.84 37.21 0.25 0.78 16 20 C -0.15 -1.51 5.40 -26.59 -0.14 -1.65 16 21 O -0.22 -3.96 10.87 5.42 0.06 -3.90 16 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.11 2.16 8.14 -51.91 -0.42 1.73 16 24 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -32.03 300.54 -5.58 -37.60 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -4.19 Total: -2.56 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.20 Total: -8.19 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.53 Total: -34.61 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.32 Total: -7.95 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.30 Total: -4.47 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.03 -5.58 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322685114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.781 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds