Wall clock time and date at job start Mon Mar 30 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 N 1.30266 * 126.28530 * 90.02248 * 11 10 9 13 13 N 1.28664 * 109.38483 * 179.97438 * 12 11 10 14 14 C 1.30282 * 109.37501 * 0.02562 * 13 12 11 15 15 C 1.50706 * 126.27827 * 180.02562 * 14 13 12 16 16 C 1.53177 * 109.54120 * 59.52991 * 15 14 13 17 17 C 1.53101 * 109.16254 * 183.14940 * 16 15 14 18 18 O 1.42905 * 109.40819 * 57.60856 * 17 16 15 19 19 C 1.42901 * 114.10169 * 298.83871 * 18 17 16 20 20 C 1.53094 * 109.41228 * 61.16238 * 19 18 17 21 21 O 1.34356 * 107.43490 * 359.75579 * 14 13 12 22 22 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 24 24 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 25 25 H 1.08997 * 109.54211 * 179.79697 * 15 14 13 26 26 H 1.09000 * 109.52548 * 303.05530 * 16 15 14 27 27 H 1.09002 * 109.52405 * 63.24367 * 16 15 14 28 28 H 1.08995 * 109.47603 * 297.62789 * 17 16 15 29 29 H 1.08999 * 109.47603 * 177.59243 * 17 16 15 30 30 H 1.08996 * 109.48280 * 301.18496 * 19 18 17 31 31 H 1.08991 * 109.48083 * 181.14448 * 19 18 17 32 32 H 1.08997 * 109.52123 * 182.48615 * 20 19 18 33 33 H 1.09007 * 109.57018 * 62.32534 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 7 1.7175 -6.0246 -1.0505 13 7 1.2860 -7.1777 -0.6770 14 6 1.2653 -7.2306 0.6246 15 6 0.8265 -8.4039 1.4625 16 6 1.7009 -9.6195 1.1399 17 6 1.1981 -10.8260 1.9370 18 8 -0.1744 -11.0662 1.6197 19 6 -1.0466 -9.9816 1.9439 20 6 -0.6340 -8.7412 1.1471 21 8 1.7125 -6.0494 1.0827 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7315 -0.8895 24 1 3.1244 -3.7315 0.8905 25 1 0.9230 -8.1538 2.5190 26 1 1.6426 -9.8374 0.0735 27 1 2.7346 -9.4075 1.4132 28 1 1.2946 -10.6228 3.0035 29 1 1.7900 -11.7042 1.6790 30 1 -0.9795 -9.7674 3.0105 31 1 -2.0718 -10.2516 1.6909 32 1 -1.2701 -7.9011 1.4257 33 1 -0.7397 -8.9404 0.0806 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322685114.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:12 Heat of formation + Delta-G solvation = -48.802917 kcal Electronic energy + Delta-G solvation = -17830.092991 eV Core-core repulsion = 14789.622350 eV Total energy + Delta-G solvation = -3040.470640 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.39056 -40.33245 -37.32212 -35.91422 -34.66424 -33.36969 -32.13791 -29.54958 -27.75652 -26.66682 -24.59663 -24.08531 -23.50861 -21.21205 -19.92223 -18.62789 -18.36901 -17.38810 -16.93869 -16.93209 -16.43482 -16.07208 -15.85486 -15.60293 -14.93482 -14.70698 -14.58719 -14.30896 -13.60627 -13.38398 -13.26007 -13.03851 -12.90462 -12.85624 -12.71834 -12.37557 -12.10184 -12.00883 -11.84952 -11.39534 -11.17808 -10.81252 -10.62294 -10.31237 -8.82857 -8.42660 -6.23942 -0.12991 0.93915 1.10092 1.37487 1.44113 1.51882 1.69866 2.18883 2.59127 2.93750 2.97361 3.16844 3.28554 3.49315 3.59822 3.82462 3.93625 3.98852 4.13243 4.27281 4.29676 4.36436 4.49311 4.54417 4.58723 4.69811 4.71628 4.82548 5.02917 5.04232 5.21956 5.37457 6.13794 6.25387 6.99568 7.14734 8.66770 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.050947 B = 0.003435 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.458079 B = 8150.301757 C = 8371.186980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.090 0.910 9 S -0.153 6.153 10 C -0.014 4.014 11 C 0.197 3.803 12 N -0.307 5.307 13 N -0.307 5.307 14 C 0.169 3.831 15 C 0.010 3.990 16 C -0.144 4.144 17 C 0.066 3.934 18 O -0.400 6.400 19 C 0.068 3.932 20 C -0.148 4.148 21 O -0.224 6.224 22 H 0.274 0.726 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 -18.587 7.668 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.822 3.178 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.689 4.689 8 H 0.108 0.892 9 S 0.073 5.927 10 C -0.162 4.162 11 C -0.015 4.015 12 N -0.154 5.154 13 N -0.152 5.152 14 C -0.043 4.043 15 C -0.010 4.010 16 C -0.182 4.182 17 C -0.011 4.011 18 O -0.319 6.319 19 C -0.008 4.008 20 C -0.187 4.187 21 O -0.103 6.103 22 H 0.083 0.917 23 H 0.140 0.860 24 H 0.136 0.864 25 H 0.145 0.855 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.567 -19.203 6.333 20.281 hybrid contribution 1.698 2.153 0.852 2.872 sum 3.265 -17.049 7.186 18.788 Atomic orbital electron populations 1.70139 1.07909 1.29023 1.47424 1.26119 0.96008 1.03257 0.93311 0.84966 0.77808 0.75427 0.79623 1.18742 1.20333 1.18429 1.23065 0.95443 0.90588 1.59809 0.89195 1.85228 1.09881 1.00350 1.97197 1.21718 1.01832 0.84508 1.08170 1.27242 0.98340 0.96366 0.79557 1.74391 1.15852 0.99175 1.25997 1.74244 1.17590 1.12882 1.10507 1.28720 0.96702 0.87145 0.91782 1.20122 0.97036 0.85628 0.98190 1.22300 0.99737 0.93533 1.02629 1.22731 0.82061 0.97392 0.98880 1.87946 1.18284 1.40238 1.85388 1.22676 0.94844 0.84550 0.98733 1.22315 0.93109 1.00613 1.02653 1.84796 1.63283 1.24181 1.38071 0.91719 0.86027 0.86386 0.85528 0.91243 0.89172 0.90539 0.86629 0.90522 0.86937 0.90060 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.43 13.22 21.65 0.29 -53.15 16 2 C 0.02 1.01 5.49 84.86 0.47 1.47 16 3 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 5 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.54 -29.56 9.50 67.96 0.65 -28.91 16 8 H 0.09 4.54 7.80 -2.91 -0.02 4.52 16 9 S -0.15 -8.01 21.42 -56.49 -1.21 -9.22 16 10 C -0.01 -0.54 6.30 71.24 0.45 -0.10 16 11 C 0.20 7.73 7.73 88.34 0.68 8.41 16 12 N -0.31 -12.69 12.22 -165.51 -2.02 -14.71 16 13 N -0.31 -11.32 12.22 -165.50 -2.02 -13.35 16 14 C 0.17 5.19 7.00 88.34 0.62 5.81 16 15 C 0.01 0.20 2.75 -11.42 -0.03 0.17 16 16 C -0.14 -2.37 5.40 30.69 0.17 -2.20 16 17 C 0.07 0.80 6.84 72.02 0.49 1.29 16 18 O -0.40 -6.73 10.76 -148.98 -1.60 -8.34 16 19 C 0.07 0.94 6.84 72.01 0.49 1.43 16 20 C -0.15 -2.80 5.40 30.68 0.17 -2.63 16 21 O -0.22 -7.88 10.87 -3.53 -0.04 -7.92 16 22 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 23 H 0.12 4.61 8.14 -2.39 -0.02 4.60 16 24 H 0.12 4.20 8.14 -2.40 -0.02 4.18 16 25 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -69.94 300.54 0.68 -69.26 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.11 Total: 8.72 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.15 Total: -15.25 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.76 Total: -81.20 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -1.64 Total: -16.26 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.21 Total: -9.22 kcal Total: -69.94 0.68 -69.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322685114.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.461 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds