Wall clock time and date at job start Mon Mar 30 2020 01:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38616 * 120.44860 * 2 1 4 4 C 1.38572 * 118.40396 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.45326 * 180.02562 * 4 3 2 6 6 S 1.81391 * 109.47313 * 89.99873 * 5 4 3 7 7 O 1.42105 * 108.57942 * 294.48966 * 6 5 4 8 8 O 1.42097 * 108.57959 * 65.51495 * 6 5 4 9 9 C 1.81398 * 101.92304 * 180.02562 * 6 5 4 10 10 C 1.53004 * 109.47358 * 179.97438 * 9 6 5 11 11 C 1.50698 * 109.47129 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00029 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99631 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99805 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47306 * 60.00081 * 15 13 11 17 17 H 1.48499 * 109.46698 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46874 * 299.99970 * 15 13 11 19 19 N 1.32349 * 119.09983 * 0.27577 * 4 3 2 20 20 C 1.31779 * 120.82108 * 359.44198 * 19 4 3 21 21 N 1.31814 * 121.75333 * 0.57355 * 20 19 4 22 22 H 1.09001 * 109.47291 * 89.99972 * 1 2 3 23 23 H 1.09002 * 109.47084 * 209.99889 * 1 2 3 24 24 H 1.08997 * 109.47300 * 329.99878 * 1 2 3 25 25 H 1.08008 * 120.80072 * 0.04518 * 3 2 1 26 26 H 1.09003 * 109.46853 * 329.99355 * 5 4 3 27 27 H 1.09003 * 109.47076 * 210.00600 * 5 4 3 28 28 H 1.08998 * 109.47096 * 300.00087 * 9 6 5 29 29 H 1.09006 * 109.47169 * 59.99793 * 9 6 5 30 30 H 1.08998 * 109.47355 * 300.00255 * 10 9 6 31 31 H 1.09001 * 109.46568 * 60.00607 * 10 9 6 32 32 H 0.97004 * 119.99480 * 180.02562 * 14 13 11 33 33 H 1.08008 * 119.12729 * 180.26772 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1455 -0.0005 5 6 4.4040 2.4165 0.0000 6 16 4.7294 2.9254 1.7104 7 8 3.4941 3.2669 2.3241 8 8 5.5618 1.9498 2.3224 9 6 5.6948 4.4427 1.4727 10 6 6.0682 5.0285 2.8360 11 6 6.8707 6.2886 2.6384 12 1 7.0920 6.6370 1.6404 13 6 7.3225 6.9967 3.7319 14 7 7.0535 6.5720 4.9471 15 14 8.3168 8.5591 3.4870 16 1 7.5076 9.5471 2.7292 17 1 8.6802 9.1269 4.8102 18 1 9.5533 8.2449 2.7271 19 7 4.1963 -0.0331 -0.0066 20 6 3.4956 -1.1492 -0.0011 21 7 2.1775 -1.1407 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6900 2.1419 0.0007 26 1 3.8483 3.2014 -0.5132 27 1 5.3496 2.2452 -0.5144 28 1 6.6025 4.2121 0.9150 29 1 5.1009 5.1678 0.9164 30 1 5.1603 5.2591 3.3933 31 1 6.6621 4.3035 3.3925 32 1 7.3711 7.0704 5.7164 33 1 4.0151 -2.0961 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326109549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:16 Heat of formation + Delta-G solvation = -34.805563 kcal Electronic energy + Delta-G solvation = -17977.019971 eV Core-core repulsion = 14937.156302 eV Total energy + Delta-G solvation = -3039.863670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28404 -36.57022 -35.63503 -35.08941 -33.92376 -33.57632 -31.23512 -29.80655 -28.09633 -25.65649 -24.38867 -22.36766 -21.31858 -18.54205 -17.89190 -17.10235 -16.78020 -16.03138 -15.74647 -15.60932 -15.22140 -15.05130 -14.54292 -13.77121 -13.64018 -13.44179 -13.24994 -12.92240 -12.56242 -12.50250 -11.80556 -11.65051 -11.58542 -11.39400 -11.08789 -11.07884 -10.98777 -10.46915 -10.39785 -10.28371 -9.79429 -9.63408 -9.48786 -9.16352 -8.51347 -6.13610 -4.19968 0.08587 0.72167 0.91490 3.09206 3.26352 3.31403 3.32890 3.48001 3.54837 3.81383 3.93511 4.17440 4.34892 4.36383 4.63673 4.76154 4.87698 5.08212 5.21417 5.21924 5.27693 5.34527 5.51749 5.57701 5.61940 5.64261 6.16579 6.41657 6.77774 7.30508 7.35865 7.78459 7.86659 8.14379 8.83282 9.44719 10.97214 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048272 B = 0.003844 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.907560 B = 7281.498512 C = 7409.360971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.178 3.822 3 C -0.215 4.215 4 C 0.187 3.813 5 C -0.585 4.585 6 S 2.398 3.602 7 O -0.937 6.937 8 O -0.927 6.927 9 C -0.566 4.566 10 C 0.028 3.972 11 C -0.523 4.523 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.901 3.099 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 N -0.510 5.510 20 C 0.303 3.697 21 N -0.522 5.522 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.156 0.844 26 H 0.150 0.850 27 H 0.154 0.846 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 -10.358 -12.821 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.237 4.237 4 C 0.040 3.960 5 C -0.708 4.708 6 S 2.581 3.419 7 O -0.934 6.934 8 O -0.924 6.924 9 C -0.699 4.699 10 C -0.010 4.010 11 C -0.563 4.563 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.527 5.527 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.225 5.225 20 C 0.015 3.985 21 N -0.238 5.238 22 H 0.105 0.895 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.172 0.828 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.143 -11.659 -11.899 19.504 hybrid contribution 0.486 1.969 -0.933 2.233 sum -9.658 -9.690 -12.832 18.757 Atomic orbital electron populations 1.20823 0.87383 1.04553 1.03746 1.21789 0.97895 0.87919 0.89261 1.22727 0.95179 1.01521 1.04317 1.20469 0.90919 0.92382 0.92196 1.29691 1.09569 1.01556 1.30004 1.09033 0.77166 0.79167 0.76578 1.93550 1.44099 1.84343 1.71420 1.93574 1.68300 1.59319 1.71252 1.30210 1.12553 1.15634 1.11515 1.19010 0.98478 0.97272 0.86289 1.20968 1.34460 1.07830 0.93034 0.91995 1.25069 0.96149 0.98089 0.95117 1.69951 1.45328 1.39534 0.97864 0.86515 0.80394 0.82813 0.77460 1.20057 1.21059 1.20046 1.68215 1.41961 0.98504 1.13864 1.25036 0.86634 0.96728 0.90127 1.68280 1.10403 1.30362 1.14710 0.89548 0.89674 0.89634 0.82651 0.83195 0.82760 0.85792 0.85893 0.94547 0.94517 0.92425 0.78143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.22 36.01 0.37 -0.44 16 2 C 0.18 2.04 6.82 -82.24 -0.56 1.48 16 3 C -0.21 -2.60 9.54 -39.32 -0.38 -2.97 16 4 C 0.19 2.60 6.08 -82.25 -0.50 2.10 16 5 C -0.59 -7.01 6.14 36.00 0.22 -6.79 16 6 S 2.40 41.11 4.70 -107.50 -0.51 40.60 16 7 O -0.94 -18.47 18.10 -57.83 -1.05 -19.51 16 8 O -0.93 -19.48 18.10 -57.83 -1.05 -20.52 16 9 C -0.57 -10.11 5.74 37.16 0.21 -9.90 16 10 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 11 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 12 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 15 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 N -0.51 -7.47 10.38 -10.80 -0.11 -7.59 16 20 C 0.30 3.80 12.29 -92.15 -1.13 2.67 16 21 N -0.52 -6.55 10.38 -10.79 -0.11 -6.66 16 22 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 25 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.15 1.20 8.10 -51.92 -0.42 0.78 16 27 H 0.15 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.20 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 307.53 15.07 4.63 4.63 Total: -1.00 -36.95 307.53 -8.98 -45.92 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.19 Total: -0.95 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: -2.32 Total: -26.27 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.51 Total: -39.80 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.09 Total: -40.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 41.11 SS G_CDS: -0.51 Total: 40.60 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.95 -8.98 -45.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326109549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.117 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds