Wall clock time and date at job start Mon Mar 30 2020 01:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38616 * 120.44860 * 2 1 4 4 C 1.38572 * 118.40396 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.45326 * 180.02562 * 4 3 2 6 6 S 1.81391 * 109.47313 * 89.99873 * 5 4 3 7 7 O 1.42105 * 108.57942 * 294.48966 * 6 5 4 8 8 O 1.42097 * 108.57959 * 65.51495 * 6 5 4 9 9 C 1.81398 * 101.92304 * 180.02562 * 6 5 4 10 10 C 1.53004 * 109.47358 * 179.97438 * 9 6 5 11 11 C 1.50698 * 109.47129 * 179.97438 * 10 9 6 12 12 H 1.08000 * 120.00029 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99905 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99631 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99805 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47306 * 60.00081 * 15 13 11 17 17 H 1.48499 * 109.46698 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.46874 * 299.99970 * 15 13 11 19 19 N 1.32349 * 119.09983 * 0.27577 * 4 3 2 20 20 C 1.31779 * 120.82108 * 359.44198 * 19 4 3 21 21 N 1.31814 * 121.75333 * 0.57355 * 20 19 4 22 22 H 1.09001 * 109.47291 * 89.99972 * 1 2 3 23 23 H 1.09002 * 109.47084 * 209.99889 * 1 2 3 24 24 H 1.08997 * 109.47300 * 329.99878 * 1 2 3 25 25 H 1.08008 * 120.80072 * 0.04518 * 3 2 1 26 26 H 1.09003 * 109.46853 * 329.99355 * 5 4 3 27 27 H 1.09003 * 109.47076 * 210.00600 * 5 4 3 28 28 H 1.08998 * 109.47096 * 300.00087 * 9 6 5 29 29 H 1.09006 * 109.47169 * 59.99793 * 9 6 5 30 30 H 1.08998 * 109.47355 * 300.00255 * 10 9 6 31 31 H 1.09001 * 109.46568 * 60.00607 * 10 9 6 32 32 H 0.97004 * 119.99480 * 180.02562 * 14 13 11 33 33 H 1.08008 * 119.12729 * 180.26772 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1455 -0.0005 5 6 4.4040 2.4165 0.0000 6 16 4.7294 2.9254 1.7104 7 8 3.4941 3.2669 2.3241 8 8 5.5618 1.9498 2.3224 9 6 5.6948 4.4427 1.4727 10 6 6.0682 5.0285 2.8360 11 6 6.8707 6.2886 2.6384 12 1 7.0920 6.6370 1.6404 13 6 7.3225 6.9967 3.7319 14 7 7.0535 6.5720 4.9471 15 14 8.3168 8.5591 3.4870 16 1 7.5076 9.5471 2.7292 17 1 8.6802 9.1269 4.8102 18 1 9.5533 8.2449 2.7271 19 7 4.1963 -0.0331 -0.0066 20 6 3.4956 -1.1492 -0.0011 21 7 2.1775 -1.1407 -0.0006 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6900 2.1419 0.0007 26 1 3.8483 3.2014 -0.5132 27 1 5.3496 2.2452 -0.5144 28 1 6.6025 4.2121 0.9150 29 1 5.1009 5.1678 0.9164 30 1 5.1603 5.2591 3.3933 31 1 6.6621 4.3035 3.3925 32 1 7.3711 7.0704 5.7164 33 1 4.0151 -2.0961 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326109549.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:16 Heat of formation + Delta-G solvation = -62.636620 kcal Electronic energy + Delta-G solvation = -17978.226816 eV Core-core repulsion = 14937.156302 eV Total energy + Delta-G solvation = -3041.070515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18775 -38.04025 -37.09189 -36.02222 -35.84744 -34.45917 -33.12631 -30.72478 -28.91788 -27.54946 -25.31245 -23.77710 -22.69435 -19.92368 -18.89310 -18.81523 -17.82099 -17.50598 -17.07378 -16.67009 -16.51445 -16.41662 -15.98298 -15.17738 -14.71863 -14.41568 -14.34214 -13.92878 -13.76930 -13.72001 -13.18870 -13.13005 -13.07626 -12.87345 -12.75996 -12.52460 -12.18877 -12.11290 -11.97428 -11.73026 -11.35544 -10.98751 -10.62074 -10.54812 -10.40963 -8.24072 -6.38662 -1.21522 -0.18070 -0.04580 1.42749 1.46483 1.54493 1.81219 2.38040 2.44684 2.62943 2.91116 3.02063 3.04022 3.09651 3.26426 3.72694 3.93242 3.99409 4.05450 4.19647 4.30417 4.49904 4.52252 4.72077 4.80897 4.81717 5.03584 5.31284 5.31619 5.36694 5.70501 5.87498 6.06843 6.76224 6.94626 7.31796 8.88143 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048272 B = 0.003844 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.907560 B = 7281.498512 C = 7409.360971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.169 3.831 3 C -0.219 4.219 4 C 0.155 3.845 5 C -0.550 4.550 6 S 2.401 3.599 7 O -0.973 6.973 8 O -0.980 6.980 9 C -0.566 4.566 10 C 0.018 3.982 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.287 1.287 18 H -0.263 1.263 19 N -0.538 5.538 20 C 0.291 3.709 21 N -0.533 5.533 22 H 0.108 0.892 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.183 0.817 26 H 0.201 0.799 27 H 0.181 0.819 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.006 0.994 31 H 0.001 0.999 32 H 0.266 0.734 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.047 -9.609 -15.767 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.022 3.978 3 C -0.242 4.242 4 C 0.009 3.991 5 C -0.679 4.679 6 S 2.590 3.410 7 O -0.970 6.970 8 O -0.977 6.977 9 C -0.698 4.698 10 C -0.020 4.020 11 C -0.579 4.579 12 H 0.100 0.900 13 C -0.205 4.205 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.185 1.185 17 H -0.213 1.213 18 H -0.187 1.187 19 N -0.254 5.254 20 C 0.003 3.997 21 N -0.248 5.248 22 H 0.126 0.874 23 H 0.105 0.895 24 H 0.119 0.881 25 H 0.200 0.800 26 H 0.218 0.782 27 H 0.198 0.802 28 H 0.169 0.831 29 H 0.176 0.824 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.827 -10.878 -14.799 21.320 hybrid contribution 0.592 1.603 -0.099 1.712 sum -10.235 -9.275 -14.898 20.316 Atomic orbital electron populations 1.20965 0.84640 1.05379 1.05328 1.22492 0.99760 0.87559 0.87961 1.23125 0.94727 1.02988 1.03372 1.20821 0.92058 0.92671 0.93512 1.29359 1.11878 1.02438 1.24199 1.08418 0.75814 0.78030 0.78767 1.93498 1.44695 1.84598 1.74248 1.93510 1.69424 1.60259 1.74556 1.30069 1.14907 1.17150 1.07710 1.18842 0.96550 0.96694 0.89952 1.21552 1.34023 1.08347 0.93947 0.89979 1.26166 0.97487 1.02044 0.94757 1.70120 1.47099 1.41422 0.98986 0.85340 0.79020 0.78299 0.77443 1.18452 1.21283 1.18741 1.68225 1.42915 0.99331 1.14917 1.25617 0.87029 0.97356 0.89652 1.68378 1.10439 1.31047 1.14970 0.87384 0.89530 0.88128 0.80009 0.78216 0.80172 0.83100 0.82364 0.97563 0.98068 0.92489 0.75667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.22 71.24 0.73 -0.57 16 2 C 0.17 3.52 6.82 42.58 0.29 3.81 16 3 C -0.22 -4.74 9.54 22.44 0.21 -4.52 16 4 C 0.15 3.96 6.08 42.56 0.26 4.22 16 5 C -0.55 -11.32 6.14 71.23 0.44 -10.88 16 6 S 2.40 81.23 4.70 -56.49 -0.27 80.97 16 7 O -0.97 -38.62 18.10 -127.37 -2.30 -40.92 16 8 O -0.98 -42.51 18.10 -127.37 -2.31 -44.82 16 9 C -0.57 -19.58 5.74 71.98 0.41 -19.16 16 10 C 0.02 0.94 4.98 29.85 0.15 1.08 16 11 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 12 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 13 C -0.01 -0.36 5.46 84.66 0.46 0.11 16 14 N -0.94 -57.35 13.29 21.45 0.28 -57.07 16 15 Si 0.98 42.73 29.54 68.60 2.03 44.76 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 N -0.54 -15.07 10.38 -188.08 -1.95 -17.02 16 20 C 0.29 7.00 12.29 180.88 2.22 9.23 16 21 N -0.53 -12.61 10.38 -188.06 -1.95 -14.56 16 22 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 0.94 8.10 -2.39 -0.02 0.92 16 25 H 0.18 2.76 8.06 -2.91 -0.02 2.73 16 26 H 0.20 2.09 8.10 -2.39 -0.02 2.07 16 27 H 0.18 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.15 4.33 8.14 -2.39 -0.02 4.31 16 29 H 0.16 4.26 8.14 -2.39 -0.02 4.24 16 30 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.23 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -84.92 307.53 0.05 -84.88 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.11 Total: 9.62 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 5.41 Total: -45.83 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -3.62 Total: -88.66 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -4.61 Total: -85.74 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 81.23 SS G_CDS: -0.27 Total: 80.97 kcal Total: -84.92 0.05 -84.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326109549.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.240 kcal (2) G-P(sol) polarization free energy of solvation -84.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds