Wall clock time and date at job start Mon Mar 30 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32157 * 120.00124 * 2 1 4 4 C 1.32123 * 119.99725 * 180.27390 * 3 2 1 5 5 C 1.38397 * 119.99956 * 359.73600 * 4 3 2 6 6 N 1.32128 * 119.99628 * 0.02562 * 5 4 3 7 7 C 1.32154 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00220 * 179.97438 * 7 6 5 9 9 S 1.81397 * 109.47317 * 90.00034 * 8 7 6 10 10 O 1.42107 * 108.57640 * 65.51479 * 9 8 7 11 11 O 1.42101 * 108.58050 * 294.49134 * 9 8 7 12 12 C 1.81399 * 101.92362 * 180.02562 * 9 8 7 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 H 1.09001 * 109.47236 * 270.24823 * 1 2 3 23 23 H 1.09001 * 109.46845 * 30.24473 * 1 2 3 24 24 H 1.08997 * 109.46938 * 150.24088 * 1 2 3 25 25 H 1.07995 * 119.99992 * 179.75290 * 4 3 2 26 26 H 1.08000 * 119.99933 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.47169 * 330.00153 * 8 7 6 28 28 H 1.08997 * 109.47453 * 210.00564 * 8 7 6 29 29 H 1.09000 * 109.47070 * 300.00212 * 12 9 8 30 30 H 1.09001 * 109.46593 * 60.00209 * 12 9 8 31 31 H 1.09000 * 109.47486 * 299.99969 * 13 12 9 32 32 H 1.09001 * 109.47362 * 60.00691 * 13 12 9 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1444 -0.0055 5 6 4.1810 -0.0542 -0.0057 6 7 3.5202 -1.1984 -0.0009 7 6 2.1986 -1.1982 0.0046 8 6 1.4450 -2.5032 0.0094 9 16 1.1497 -3.0245 1.7215 10 8 0.2784 -2.0855 2.3368 11 8 2.4014 -3.3116 2.3298 12 6 0.2500 -4.5825 1.4890 13 6 -0.0913 -5.1829 2.8542 14 6 -0.8382 -6.4775 2.6611 15 1 -1.0480 -6.8363 1.6643 16 6 -1.2536 -7.2039 3.7568 17 7 -0.9977 -6.7672 4.9707 18 14 -2.1800 -8.8083 3.5174 19 1 -2.3386 -9.0762 2.0654 20 1 -1.4183 -9.9180 4.1447 21 1 -3.5188 -8.7062 4.1517 22 1 -0.3634 0.0045 1.0277 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3633 -0.8921 -0.5101 25 1 4.0291 2.0796 -0.0095 26 1 5.2610 -0.0543 -0.0106 27 1 2.0319 -3.2636 -0.5058 28 1 0.4906 -2.3735 -0.5007 29 1 -0.6693 -4.3920 0.9353 30 1 0.8725 -5.2815 0.9304 31 1 0.8283 -5.3734 3.4076 32 1 -0.7136 -4.4840 3.4132 33 1 -1.2896 -7.2783 5.7417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330275546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:29 Heat of formation + Delta-G solvation = -31.056337 kcal Electronic energy + Delta-G solvation = -18297.024338 eV Core-core repulsion = 15257.323247 eV Total energy + Delta-G solvation = -3039.701091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39997 -36.55523 -35.59829 -34.82309 -34.32001 -33.90943 -31.22220 -29.36122 -28.01763 -25.67216 -23.66555 -22.93142 -21.46707 -18.52165 -18.12771 -17.12713 -16.81606 -16.13462 -15.92336 -15.66751 -15.07569 -14.84477 -14.51056 -13.85584 -13.56267 -13.26808 -12.97376 -12.88350 -12.52388 -12.08580 -11.78892 -11.72389 -11.60168 -11.55732 -11.50646 -11.10578 -10.96602 -10.76798 -10.40362 -10.38241 -9.75938 -9.31897 -9.29647 -9.01647 -8.51396 -6.13221 -4.19328 0.08476 0.66602 0.96526 3.12383 3.24983 3.32290 3.35322 3.42602 3.55965 3.86505 4.01798 4.18373 4.31692 4.36717 4.46322 4.80681 4.88057 5.02849 5.13382 5.22063 5.32137 5.49565 5.57705 5.60185 5.63687 5.89367 6.18677 6.43082 7.04971 7.31759 7.36845 7.54516 7.79446 8.15174 8.84469 9.45508 10.97699 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046279 B = 0.004185 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.880325 B = 6688.286485 C = 6841.040880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.099 3.901 3 N -0.437 5.437 4 C 0.055 3.945 5 C 0.044 3.956 6 N -0.419 5.419 7 C 0.084 3.916 8 C -0.580 4.580 9 S 2.396 3.604 10 O -0.936 6.936 11 O -0.930 6.930 12 C -0.567 4.567 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.063 0.937 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.107 0.893 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.174 0.826 26 H 0.175 0.825 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 12.839 -12.849 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.041 4.041 3 N -0.152 5.152 4 C -0.106 4.106 5 C -0.116 4.116 6 N -0.134 5.134 7 C -0.057 4.057 8 C -0.704 4.704 9 S 2.579 3.421 10 O -0.933 6.933 11 O -0.927 6.927 12 C -0.701 4.701 13 C -0.011 4.011 14 C -0.561 4.561 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.125 0.875 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.191 0.809 26 H 0.192 0.808 27 H 0.170 0.830 28 H 0.168 0.832 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.068 13.275 -11.925 18.848 hybrid contribution -0.446 -1.215 -0.900 1.576 sum 5.623 12.060 -12.825 18.481 Atomic orbital electron populations 1.21010 0.87150 1.03892 1.05585 1.22185 0.98879 0.88608 0.94461 1.68363 1.08966 1.28610 1.09268 1.23875 0.90839 1.00037 0.95805 1.23817 1.02126 0.88392 0.97281 1.68220 1.07576 1.30317 1.07287 1.20869 0.90824 0.93965 1.00085 1.29650 1.08620 1.02437 1.29678 1.09082 0.76928 0.79376 0.76708 1.93537 1.66761 1.61462 1.71547 1.93566 1.42613 1.84958 1.71580 1.30217 1.12186 1.16188 1.11470 1.19015 0.98616 0.97193 0.86264 1.21048 1.36652 1.05323 0.93080 0.91895 1.25069 0.96008 0.98253 0.95130 1.69968 1.45984 1.38915 0.97830 0.86411 0.79514 0.83007 0.78338 1.19612 1.20788 1.20776 0.87460 0.89710 0.90015 0.80895 0.80794 0.82997 0.83183 0.85877 0.85886 0.94582 0.94506 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.52 36.01 0.34 -0.97 16 2 C 0.10 1.34 6.79 -82.41 -0.56 0.78 16 3 N -0.44 -5.66 10.42 -9.28 -0.10 -5.75 16 4 C 0.06 0.57 11.23 -17.37 -0.19 0.37 16 5 C 0.04 0.49 11.23 -17.37 -0.19 0.29 16 6 N -0.42 -6.05 10.42 -9.28 -0.10 -6.15 16 7 C 0.08 1.19 6.05 -82.42 -0.50 0.69 16 8 C -0.58 -7.15 5.71 36.00 0.21 -6.95 16 9 S 2.40 41.39 4.70 -107.50 -0.51 40.88 16 10 O -0.94 -18.13 17.15 -57.83 -0.99 -19.12 16 11 O -0.93 -19.71 18.10 -57.83 -1.05 -20.76 16 12 C -0.57 -10.20 5.74 37.16 0.21 -9.98 16 13 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 14 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.11 1.31 7.46 -51.93 -0.39 0.92 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.08 0.70 5.94 -51.93 -0.31 0.39 16 25 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 26 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.15 1.56 8.14 -51.92 -0.42 1.13 16 28 H 0.15 1.28 5.94 -51.93 -0.31 0.97 16 29 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 30 H 0.12 1.93 8.14 -51.92 -0.42 1.50 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 301.11 15.07 4.54 4.54 Total: -1.00 -37.02 301.11 -7.65 -44.67 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.93 Total: -0.49 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -1.24 Total: -28.15 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.54 Total: -37.46 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -2.04 Total: -39.88 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 41.39 SS G_CDS: -0.51 Total: 40.88 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.02 -7.65 -44.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330275546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.613 kcal (2) G-P(sol) polarization free energy of solvation -37.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds