Wall clock time and date at job start Mon Mar 30 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32157 * 120.00124 * 2 1 4 4 C 1.32123 * 119.99725 * 180.27390 * 3 2 1 5 5 C 1.38397 * 119.99956 * 359.73600 * 4 3 2 6 6 N 1.32128 * 119.99628 * 0.02562 * 5 4 3 7 7 C 1.32154 * 120.00187 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00220 * 179.97438 * 7 6 5 9 9 S 1.81397 * 109.47317 * 90.00034 * 8 7 6 10 10 O 1.42107 * 108.57640 * 65.51479 * 9 8 7 11 11 O 1.42101 * 108.58050 * 294.49134 * 9 8 7 12 12 C 1.81399 * 101.92362 * 180.02562 * 9 8 7 13 13 C 1.52999 * 109.46810 * 179.97438 * 12 9 8 14 14 C 1.50706 * 109.46953 * 180.02562 * 13 12 9 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99769 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46691 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46740 * 119.99592 * 18 16 14 21 21 H 1.48497 * 109.47025 * 239.99950 * 18 16 14 22 22 H 1.09001 * 109.47236 * 270.24823 * 1 2 3 23 23 H 1.09001 * 109.46845 * 30.24473 * 1 2 3 24 24 H 1.08997 * 109.46938 * 150.24088 * 1 2 3 25 25 H 1.07995 * 119.99992 * 179.75290 * 4 3 2 26 26 H 1.08000 * 119.99933 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.47169 * 330.00153 * 8 7 6 28 28 H 1.08997 * 109.47453 * 210.00564 * 8 7 6 29 29 H 1.09000 * 109.47070 * 300.00212 * 12 9 8 30 30 H 1.09001 * 109.46593 * 60.00209 * 12 9 8 31 31 H 1.09000 * 109.47486 * 299.99969 * 13 12 9 32 32 H 1.09001 * 109.47362 * 60.00691 * 13 12 9 33 33 H 0.97000 * 120.00540 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4891 1.1444 -0.0055 5 6 4.1810 -0.0542 -0.0057 6 7 3.5202 -1.1984 -0.0009 7 6 2.1986 -1.1982 0.0046 8 6 1.4450 -2.5032 0.0094 9 16 1.1497 -3.0245 1.7215 10 8 0.2784 -2.0855 2.3368 11 8 2.4014 -3.3116 2.3298 12 6 0.2500 -4.5825 1.4890 13 6 -0.0913 -5.1829 2.8542 14 6 -0.8382 -6.4775 2.6611 15 1 -1.0480 -6.8363 1.6643 16 6 -1.2536 -7.2039 3.7568 17 7 -0.9977 -6.7672 4.9707 18 14 -2.1800 -8.8083 3.5174 19 1 -2.3386 -9.0762 2.0654 20 1 -1.4183 -9.9180 4.1447 21 1 -3.5188 -8.7062 4.1517 22 1 -0.3634 0.0045 1.0277 23 1 -0.3633 0.8878 -0.5176 24 1 -0.3633 -0.8921 -0.5101 25 1 4.0291 2.0796 -0.0095 26 1 5.2610 -0.0543 -0.0106 27 1 2.0319 -3.2636 -0.5058 28 1 0.4906 -2.3735 -0.5007 29 1 -0.6693 -4.3920 0.9353 30 1 0.8725 -5.2815 0.9304 31 1 0.8283 -5.3734 3.4076 32 1 -0.7136 -4.4840 3.4132 33 1 -1.2896 -7.2783 5.7417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330275546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:28 Heat of formation + Delta-G solvation = -60.811233 kcal Electronic energy + Delta-G solvation = -18298.314607 eV Core-core repulsion = 15257.323247 eV Total energy + Delta-G solvation = -3040.991360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.28963 -38.02151 -37.06039 -35.87346 -35.73804 -35.21668 -33.12092 -30.32552 -28.88583 -27.57115 -24.72072 -23.88873 -23.19374 -19.91208 -19.04959 -18.88262 -17.84853 -17.57438 -17.06676 -16.93569 -16.49950 -16.28305 -15.81204 -15.17654 -14.71513 -14.43890 -14.22758 -13.85816 -13.73612 -13.68804 -13.11892 -13.03432 -12.93722 -12.90383 -12.72663 -12.62802 -12.57896 -12.21399 -12.05010 -11.90476 -11.64332 -11.03386 -10.63878 -10.20278 -10.04992 -8.24050 -6.38443 -1.19098 -0.26431 0.04167 1.43022 1.43782 1.57095 1.83587 2.38649 2.46289 2.61311 2.93445 2.99511 3.09775 3.14023 3.34813 3.47234 3.88964 4.06097 4.09492 4.15890 4.22150 4.37016 4.47461 4.73210 4.76158 4.81641 5.09511 5.31533 5.32127 5.36686 5.71089 6.07231 6.17100 6.65875 6.76854 7.32102 8.88617 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.046279 B = 0.004185 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.880325 B = 6688.286485 C = 6841.040880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.086 3.914 3 N -0.459 5.459 4 C 0.066 3.934 5 C 0.040 3.960 6 N -0.450 5.450 7 C 0.050 3.950 8 C -0.546 4.546 9 S 2.397 3.603 10 O -0.969 6.969 11 O -0.983 6.983 12 C -0.569 4.569 13 C 0.019 3.981 14 C -0.537 4.537 15 H 0.082 0.918 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.975 3.025 19 H -0.252 1.252 20 H -0.281 1.281 21 H -0.279 1.279 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.217 0.783 26 H 0.211 0.789 27 H 0.179 0.821 28 H 0.194 0.806 29 H 0.159 0.841 30 H 0.149 0.851 31 H 0.000 1.000 32 H 0.007 0.993 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 13.124 -15.862 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.053 4.053 3 N -0.175 5.175 4 C -0.095 4.095 5 C -0.121 4.121 6 N -0.165 5.165 7 C -0.090 4.090 8 C -0.675 4.675 9 S 2.586 3.414 10 O -0.966 6.966 11 O -0.980 6.980 12 C -0.701 4.701 13 C -0.020 4.020 14 C -0.576 4.576 15 H 0.100 0.900 16 C -0.205 4.205 17 N -0.577 5.577 18 Si 0.799 3.201 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.204 1.204 22 H 0.108 0.892 23 H 0.118 0.882 24 H 0.124 0.876 25 H 0.233 0.767 26 H 0.228 0.772 27 H 0.197 0.803 28 H 0.211 0.789 29 H 0.177 0.823 30 H 0.167 0.833 31 H 0.018 0.982 32 H 0.025 0.975 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.038 13.513 -14.891 20.995 hybrid contribution -0.305 -1.102 -0.038 1.144 sum 5.733 12.411 -14.929 20.243 Atomic orbital electron populations 1.21132 0.86052 1.05963 1.05019 1.22515 0.99906 0.88672 0.94240 1.68438 1.10339 1.28586 1.10107 1.24633 0.90191 1.01663 0.93059 1.24521 1.03882 0.87791 0.95957 1.68207 1.07995 1.32213 1.08095 1.21055 0.91241 0.94561 1.02167 1.29295 1.11482 1.02760 1.23975 1.08586 0.75434 0.78492 0.78914 1.93493 1.67216 1.61608 1.74262 1.93499 1.44185 1.85482 1.74798 1.30087 1.14808 1.17460 1.07705 1.18841 0.96355 0.96912 0.89878 1.21611 1.36111 1.05948 0.93939 0.89986 1.26159 0.97111 1.02419 0.94768 1.70130 1.47722 1.40857 0.98978 0.85244 0.77756 0.77854 0.79268 1.17495 1.20657 1.20439 0.89182 0.88201 0.87573 0.76666 0.77217 0.80314 0.78886 0.82347 0.83276 0.98166 0.97489 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.52 71.24 0.68 -1.84 16 2 C 0.09 2.18 6.79 42.54 0.29 2.47 16 3 N -0.46 -10.97 10.42 -183.28 -1.91 -12.88 16 4 C 0.07 1.16 11.23 84.69 0.95 2.11 16 5 C 0.04 0.77 11.23 84.69 0.95 1.72 16 6 N -0.45 -12.16 10.42 -183.29 -1.91 -14.07 16 7 C 0.05 1.31 6.05 42.53 0.26 1.57 16 8 C -0.55 -12.01 5.71 71.23 0.41 -11.60 16 9 S 2.40 82.96 4.70 -56.49 -0.27 82.69 16 10 O -0.97 -38.56 17.15 -127.37 -2.18 -40.74 16 11 O -0.98 -43.17 18.10 -127.37 -2.30 -45.47 16 12 C -0.57 -20.02 5.74 71.98 0.41 -19.61 16 13 C 0.02 0.97 4.98 29.85 0.15 1.12 16 14 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 15 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 16 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 17 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.98 42.90 29.54 68.60 2.03 44.93 16 19 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 22 H 0.09 2.16 7.46 -2.39 -0.02 2.15 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.11 1.50 5.94 -2.39 -0.01 1.49 16 25 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 26 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 27 H 0.18 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.19 2.46 5.94 -2.39 -0.01 2.44 16 29 H 0.16 4.35 8.14 -2.39 -0.02 4.33 16 30 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -85.61 301.11 -0.36 -85.97 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.12 Total: 9.88 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 4.79 Total: -53.08 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -3.54 Total: -84.17 kcal Atomic # 8 Polarization: -81.72 SS G_CDS: -4.49 Total: -86.21 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 82.96 SS G_CDS: -0.27 Total: 82.69 kcal Total: -85.61 -0.36 -85.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330275546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.154 kcal (2) G-P(sol) polarization free energy of solvation -85.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds