Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 C 1.38391 * 120.00511 * 84.71952 * 4 2 1 6 6 N 1.32127 * 119.99801 * 179.78157 * 5 4 2 7 7 C 1.32148 * 120.00005 * 0.49449 * 6 5 4 8 8 C 1.38348 * 120.00428 * 359.73787 * 7 6 5 9 9 N 1.32126 * 119.99735 * 264.99920 * 4 2 1 10 10 S 1.81391 * 109.47235 * 120.00162 * 2 1 3 11 11 O 1.42101 * 108.57775 * 59.48826 * 10 2 1 12 12 O 1.42093 * 108.58314 * 190.51407 * 10 2 1 13 13 C 1.81399 * 101.92378 * 305.00346 * 10 2 1 14 14 C 1.52998 * 109.47215 * 179.97438 * 13 10 2 15 15 C 1.50704 * 109.46985 * 179.97438 * 14 13 10 16 16 H 1.08003 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00365 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99821 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46858 * 90.00558 * 19 17 15 21 21 H 1.48498 * 109.47296 * 209.99680 * 19 17 15 22 22 H 1.48491 * 109.47627 * 330.00449 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 1.08000 * 119.99970 * 0.02562 * 5 4 2 27 27 H 1.08001 * 120.00175 * 179.71150 * 7 6 5 28 28 H 1.07993 * 119.99911 * 179.97438 * 8 7 6 29 29 H 1.09003 * 109.47352 * 300.00238 * 13 10 2 30 30 H 1.09000 * 109.46907 * 59.99745 * 13 10 2 31 31 H 1.08997 * 109.47553 * 299.99587 * 14 13 10 32 32 H 1.09000 * 109.47254 * 60.00125 * 14 13 10 33 33 H 0.96996 * 120.00287 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.1591 -0.0213 -2.4240 6 7 2.6037 -0.6431 -3.5017 7 6 2.9180 -1.9252 -3.4424 8 6 2.7868 -2.6153 -2.2505 9 7 2.3467 -1.9922 -1.1712 10 16 2.1347 -0.8551 1.4810 11 8 1.6409 -2.1875 1.4678 12 8 3.5342 -0.6350 1.5913 13 6 1.2998 0.0575 2.8079 14 6 1.6962 -0.5346 4.1618 15 6 1.0030 0.2241 5.2641 16 1 0.3452 1.0460 5.0231 17 6 1.2086 -0.1311 6.5804 18 7 0.6034 0.5305 7.5424 19 14 2.3459 -1.5532 6.9973 20 1 3.7293 -1.0442 7.1779 21 1 1.8890 -2.2007 8.2531 22 1 2.3238 -2.5451 5.8925 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8984 1.0256 -2.4735 27 1 3.2770 -2.4347 -4.3245 28 1 3.0433 -3.6632 -2.2021 29 1 1.5948 1.1061 2.7691 30 1 0.2203 -0.0211 2.6794 31 1 1.4008 -1.5830 4.2005 32 1 2.7757 -0.4563 4.2906 33 1 0.7477 0.2804 8.4684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330608750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = -25.320102 kcal Electronic energy + Delta-G solvation = -18477.017645 eV Core-core repulsion = 15437.565296 eV Total energy + Delta-G solvation = -3039.452349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42897 -36.55553 -35.63895 -35.37024 -34.15519 -33.83599 -31.55513 -30.52103 -26.04039 -25.40761 -24.98772 -22.76473 -21.10891 -18.55399 -18.04546 -17.35261 -17.05162 -16.65704 -15.92590 -15.64565 -15.12123 -15.06989 -14.42477 -14.19319 -13.76251 -13.39143 -13.12931 -12.78703 -12.66187 -11.95523 -11.91637 -11.81395 -11.55644 -11.51468 -11.49822 -11.20407 -11.08406 -10.59217 -10.39673 -10.08984 -9.65611 -9.56243 -9.39350 -9.20847 -8.64337 -6.15258 -4.16417 0.23429 0.47742 0.81006 3.10847 3.29166 3.33935 3.36339 3.42325 3.46983 3.91483 3.95278 4.17554 4.25667 4.38353 4.43961 4.74352 4.80783 4.94054 5.02329 5.15571 5.17294 5.35078 5.43127 5.51393 5.53331 5.84719 6.01590 6.30872 6.86234 6.90217 6.99024 7.41492 7.56602 8.37367 8.85317 9.44791 10.97021 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.004755 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.362871 B = 5887.476391 C = 6233.140555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.542 4.542 3 H 0.151 0.849 4 C 0.101 3.899 5 C 0.067 3.933 6 N -0.435 5.435 7 C 0.045 3.955 8 C 0.067 3.933 9 N -0.435 5.435 10 S 2.416 3.584 11 O -0.915 6.915 12 O -0.943 6.943 13 C -0.573 4.573 14 C -0.006 4.006 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.868 3.132 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.260 1.260 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.173 0.827 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.035 0.965 32 H 0.029 0.971 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -1.940 -20.960 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.648 4.648 3 H 0.169 0.831 4 C -0.040 4.040 5 C -0.093 4.093 6 N -0.149 5.149 7 C -0.115 4.115 8 C -0.093 4.093 9 N -0.151 5.151 10 S 2.597 3.403 11 O -0.912 6.912 12 O -0.941 6.941 13 C -0.705 4.705 14 C -0.045 4.045 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.694 3.306 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.185 1.185 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.190 0.810 27 H 0.191 0.809 28 H 0.194 0.806 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.034 -2.641 -20.800 21.065 hybrid contribution 0.060 0.075 0.155 0.182 sum 2.094 -2.566 -20.645 20.909 Atomic orbital electron populations 1.21714 0.88226 1.04785 1.04952 1.29340 1.07442 1.12894 1.15087 0.83067 1.21193 0.96600 0.91062 0.95175 1.23530 0.95826 1.01672 0.88304 1.68498 1.07299 1.09627 1.29455 1.23855 0.97096 0.91208 0.99294 1.23838 0.94820 1.01987 0.88684 1.68339 1.07506 1.07826 1.31407 1.08587 0.76748 0.77603 0.77360 1.93536 1.81464 1.31332 1.84868 1.93526 1.28677 1.86702 1.85152 1.30197 1.13120 1.13321 1.13840 1.19420 0.97803 0.97439 0.89801 1.20863 1.28576 1.17352 0.89091 0.90364 1.24965 0.95473 0.96336 0.96250 1.69876 1.42933 1.40636 0.99988 0.86941 0.81611 0.83415 0.78641 1.19672 1.20772 1.18465 0.90221 0.89332 0.90510 0.80987 0.80852 0.80576 0.85609 0.85309 0.94636 0.95258 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.88 37.16 0.33 -1.03 16 2 C -0.54 -6.42 3.02 -27.88 -0.08 -6.50 16 3 H 0.15 1.25 8.12 -51.92 -0.42 0.83 16 4 C 0.10 1.29 5.80 -82.41 -0.48 0.82 16 5 C 0.07 0.72 10.90 -17.37 -0.19 0.53 16 6 N -0.43 -4.74 10.50 -13.06 -0.14 -4.88 16 7 C 0.05 0.41 11.22 -17.38 -0.20 0.21 16 8 C 0.07 0.71 11.23 -17.37 -0.19 0.51 16 9 N -0.44 -6.30 8.59 -9.29 -0.08 -6.38 16 10 S 2.42 41.55 3.84 -107.50 -0.41 41.14 16 11 O -0.92 -18.24 17.03 -57.83 -0.98 -19.22 16 12 O -0.94 -19.18 18.10 -57.83 -1.05 -20.22 16 13 C -0.57 -10.17 5.14 37.16 0.19 -9.98 16 14 C -0.01 -0.14 4.05 -27.88 -0.11 -0.25 16 15 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 16 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 23 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.09 0.74 6.39 -51.93 -0.33 0.41 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.13 1.93 8.14 -51.92 -0.42 1.51 16 30 H 0.13 1.98 6.77 -51.92 -0.35 1.62 16 31 H 0.04 0.85 7.20 -51.93 -0.37 0.48 16 32 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -37.33 296.55 -7.25 -44.58 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -3.99 Total: -1.73 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -1.16 Total: -28.46 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.56 Total: -37.50 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -2.03 Total: -39.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 41.55 SS G_CDS: -0.41 Total: 41.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -37.33 -7.25 -44.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330608750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.258 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds