Wall clock time and date at job start Mon Mar 30 2020 01:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 C 1.38391 * 120.00511 * 84.71952 * 4 2 1 6 6 N 1.32127 * 119.99801 * 179.78157 * 5 4 2 7 7 C 1.32148 * 120.00005 * 0.49449 * 6 5 4 8 8 C 1.38348 * 120.00428 * 359.73787 * 7 6 5 9 9 N 1.32126 * 119.99735 * 264.99920 * 4 2 1 10 10 S 1.81391 * 109.47235 * 120.00162 * 2 1 3 11 11 O 1.42101 * 108.57775 * 59.48826 * 10 2 1 12 12 O 1.42093 * 108.58314 * 190.51407 * 10 2 1 13 13 C 1.81399 * 101.92378 * 305.00346 * 10 2 1 14 14 C 1.52998 * 109.47215 * 179.97438 * 13 10 2 15 15 C 1.50704 * 109.46985 * 179.97438 * 14 13 10 16 16 H 1.08003 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00032 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00365 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99821 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.46858 * 90.00558 * 19 17 15 21 21 H 1.48498 * 109.47296 * 209.99680 * 19 17 15 22 22 H 1.48491 * 109.47627 * 330.00449 * 19 17 15 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 1.08000 * 119.99970 * 0.02562 * 5 4 2 27 27 H 1.08001 * 120.00175 * 179.71150 * 7 6 5 28 28 H 1.07993 * 119.99911 * 179.97438 * 8 7 6 29 29 H 1.09003 * 109.47352 * 300.00238 * 13 10 2 30 30 H 1.09000 * 109.46907 * 59.99745 * 13 10 2 31 31 H 1.08997 * 109.47553 * 299.99587 * 14 13 10 32 32 H 1.09000 * 109.47254 * 60.00125 * 14 13 10 33 33 H 0.96996 * 120.00287 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 6 2.1591 -0.0213 -2.4240 6 7 2.6037 -0.6431 -3.5017 7 6 2.9180 -1.9252 -3.4424 8 6 2.7868 -2.6153 -2.2505 9 7 2.3467 -1.9922 -1.1712 10 16 2.1347 -0.8551 1.4810 11 8 1.6409 -2.1875 1.4678 12 8 3.5342 -0.6350 1.5913 13 6 1.2998 0.0575 2.8079 14 6 1.6962 -0.5346 4.1618 15 6 1.0030 0.2241 5.2641 16 1 0.3452 1.0460 5.0231 17 6 1.2086 -0.1311 6.5804 18 7 0.6034 0.5305 7.5424 19 14 2.3459 -1.5532 6.9973 20 1 3.7293 -1.0442 7.1779 21 1 1.8890 -2.2007 8.2531 22 1 2.3238 -2.5451 5.8925 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8984 1.0256 -2.4735 27 1 3.2770 -2.4347 -4.3245 28 1 3.0433 -3.6632 -2.2021 29 1 1.5948 1.1061 2.7691 30 1 0.2203 -0.0211 2.6794 31 1 1.4008 -1.5830 4.2005 32 1 2.7757 -0.4563 4.2906 33 1 0.7477 0.2804 8.4684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330608750.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:12 Heat of formation + Delta-G solvation = -55.161177 kcal Electronic energy + Delta-G solvation = -18478.311651 eV Core-core repulsion = 15437.565296 eV Total energy + Delta-G solvation = -3040.746355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21660 -37.97110 -36.98259 -36.30275 -35.89170 -34.86627 -33.47592 -31.36452 -27.85483 -26.26581 -25.78039 -23.82369 -22.83496 -19.85002 -19.31464 -18.73853 -18.15501 -17.53105 -17.16863 -16.99002 -16.34633 -16.26628 -16.03199 -15.33900 -15.05266 -14.81024 -14.25860 -13.94208 -13.75093 -13.52797 -13.12186 -13.03676 -12.98082 -12.87849 -12.67955 -12.62241 -12.35220 -12.15106 -11.98205 -11.74226 -11.58232 -11.04379 -10.83455 -10.33411 -10.13677 -8.36106 -6.40635 -1.02711 -0.31908 0.01084 1.30639 1.33121 1.43843 1.86912 2.29828 2.54058 2.57454 2.86533 2.98141 3.08608 3.27653 3.46936 3.53226 3.73395 3.95339 4.07717 4.13899 4.21638 4.32748 4.51596 4.59209 4.68619 4.71835 5.06157 5.11796 5.20174 5.30863 5.48440 6.14424 6.17986 6.64764 6.65346 7.23900 8.79162 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.004755 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.362871 B = 5887.476391 C = 6233.140555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.506 4.506 3 H 0.195 0.805 4 C 0.070 3.930 5 C 0.074 3.926 6 N -0.451 5.451 7 C 0.059 3.941 8 C 0.052 3.948 9 N -0.484 5.484 10 S 2.414 3.586 11 O -0.955 6.955 12 O -0.986 6.986 13 C -0.580 4.580 14 C -0.016 4.016 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.017 3.983 18 N -0.938 5.938 19 Si 0.919 3.081 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.256 1.256 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.207 0.793 27 H 0.214 0.786 28 H 0.200 0.800 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -1.532 -23.654 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.618 4.618 3 H 0.212 0.788 4 C -0.070 4.070 5 C -0.086 4.086 6 N -0.165 5.165 7 C -0.100 4.100 8 C -0.108 4.108 9 N -0.200 5.200 10 S 2.600 3.400 11 O -0.952 6.952 12 O -0.983 6.983 13 C -0.710 4.710 14 C -0.055 4.055 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.182 4.182 18 N -0.578 5.578 19 Si 0.742 3.258 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.180 1.180 23 H 0.082 0.918 24 H 0.121 0.879 25 H 0.129 0.871 26 H 0.223 0.777 27 H 0.230 0.770 28 H 0.216 0.784 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.229 -2.254 -23.425 23.639 hybrid contribution -0.042 -0.023 0.804 0.805 sum 2.188 -2.277 -22.621 22.841 Atomic orbital electron populations 1.21896 0.86464 1.04632 1.07366 1.29017 1.08755 1.13791 1.10259 0.78804 1.21376 0.98415 0.91119 0.96113 1.23971 0.94515 1.02891 0.87218 1.68619 1.07969 1.10439 1.29500 1.24468 0.94939 0.90710 0.99909 1.24344 0.94666 1.03227 0.88540 1.68273 1.09003 1.09172 1.33568 1.08197 0.75774 0.77279 0.78703 1.93483 1.81643 1.34010 1.86041 1.93468 1.31151 1.87166 1.86493 1.30162 1.14885 1.14583 1.11371 1.19348 0.97073 0.96903 0.92167 1.21208 1.27920 1.16824 0.90399 0.92416 1.25784 0.97081 0.98860 0.96461 1.69988 1.44771 1.42503 1.00506 0.86112 0.80137 0.80705 0.78819 1.18673 1.19679 1.17956 0.91768 0.87867 0.87101 0.77671 0.76965 0.78372 0.83177 0.83120 0.95430 0.95763 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.88 71.98 0.64 -1.74 16 2 C -0.51 -10.56 3.02 29.85 0.09 -10.47 16 3 H 0.19 2.32 8.12 -2.39 -0.02 2.30 16 4 C 0.07 1.64 5.80 42.55 0.25 1.88 16 5 C 0.07 1.32 10.90 84.68 0.92 2.24 16 6 N -0.45 -8.36 10.50 -195.22 -2.05 -10.41 16 7 C 0.06 0.90 11.22 84.67 0.95 1.85 16 8 C 0.05 1.02 11.23 84.67 0.95 1.97 16 9 N -0.48 -13.48 8.59 -183.29 -1.58 -15.05 16 10 S 2.41 81.68 3.84 -56.49 -0.22 81.46 16 11 O -0.95 -38.67 17.03 -127.37 -2.17 -40.83 16 12 O -0.99 -40.23 18.10 -127.37 -2.30 -42.53 16 13 C -0.58 -20.10 5.14 71.98 0.37 -19.73 16 14 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 15 C -0.52 -29.56 9.66 25.60 0.25 -29.31 16 16 H 0.06 3.39 7.99 -2.91 -0.02 3.37 16 17 C 0.02 0.98 5.47 84.65 0.46 1.45 16 18 N -0.94 -57.56 13.96 21.45 0.30 -57.26 16 19 Si 0.92 44.83 27.47 68.60 1.88 46.71 16 20 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 21 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.38 6.39 -2.39 -0.02 1.37 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.21 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.15 4.36 8.14 -2.39 -0.02 4.34 16 30 H 0.15 4.44 6.77 -2.39 -0.02 4.42 16 31 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 32 H 0.02 1.17 7.57 -2.39 -0.02 1.15 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -84.27 296.55 -0.07 -84.34 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.06 Total: 6.10 kcal Atomic # 6 Polarization: -57.54 SS G_CDS: 5.00 Total: -52.54 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.33 Total: -82.71 kcal Atomic # 8 Polarization: -78.89 SS G_CDS: -4.47 Total: -83.37 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Atomic # 16 Polarization: 81.68 SS G_CDS: -0.22 Total: 81.46 kcal Total: -84.27 -0.07 -84.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330608750.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.179 kcal (2) G-P(sol) polarization free energy of solvation -84.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds