Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38623 * 120.44713 * 2 1 4 4 C 1.38580 * 118.39507 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.44225 * 180.02562 * 4 3 2 6 6 S 1.81404 * 109.46895 * 90.00275 * 5 4 3 7 7 O 1.42098 * 108.57840 * 65.51073 * 6 5 4 8 8 O 1.42100 * 108.57577 * 294.47950 * 6 5 4 9 9 C 1.81399 * 101.91985 * 179.97438 * 6 5 4 10 10 C 1.50702 * 109.47410 * 179.97438 * 9 6 5 11 11 H 1.08003 * 119.99606 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00217 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99909 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99980 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47104 * 89.99581 * 14 12 10 16 16 H 1.48500 * 109.46876 * 209.99805 * 14 12 10 17 17 H 1.48506 * 109.46930 * 329.99720 * 14 12 10 18 18 N 1.32343 * 119.10694 * 0.27239 * 4 3 2 19 19 C 1.31784 * 120.82045 * 359.44780 * 18 4 3 20 20 C 1.50697 * 119.12179 * 180.31032 * 19 18 4 21 21 N 1.31811 * 121.74928 * 0.56723 * 19 18 4 22 22 H 1.08996 * 109.46654 * 90.00304 * 1 2 3 23 23 H 1.08996 * 109.46936 * 209.99944 * 1 2 3 24 24 H 1.08991 * 109.46859 * 330.00486 * 1 2 3 25 25 H 1.07991 * 120.80187 * 359.95306 * 3 2 1 26 26 H 1.08997 * 109.47474 * 329.99765 * 5 4 3 27 27 H 1.08995 * 109.46859 * 209.99616 * 5 4 3 28 28 H 1.09004 * 109.47089 * 299.99788 * 9 6 5 29 29 H 1.09004 * 109.47568 * 59.99798 * 9 6 5 30 30 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47084 * 270.24841 * 20 19 18 32 32 H 1.09001 * 109.47339 * 30.25208 * 20 19 18 33 33 H 1.09003 * 109.47120 * 150.25079 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1454 0.0005 5 6 4.4040 2.4165 0.0012 6 16 4.7282 2.9261 1.7117 7 8 5.5601 1.9507 2.3247 8 8 3.4924 3.2679 2.3242 9 6 5.6950 4.4424 1.4741 10 6 6.0619 5.0199 2.8169 11 1 5.7448 4.5245 3.7226 12 6 6.8015 6.1813 2.8891 13 7 7.1873 6.7848 1.7861 14 14 7.2569 6.8966 4.5535 15 1 8.5584 6.3341 4.9948 16 1 7.3675 8.3734 4.4440 17 1 6.2066 6.5510 5.5449 18 7 4.1964 -0.0332 -0.0045 19 6 3.4956 -1.1492 0.0010 20 6 4.2206 -2.4704 0.0021 21 7 2.1776 -1.1407 0.0005 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6901 2.1418 -0.0008 26 1 3.8489 3.2012 -0.5127 27 1 5.3500 2.2449 -0.5123 28 1 6.6031 4.2109 0.9174 29 1 5.1023 5.1678 0.9168 30 1 7.7073 7.6021 1.8369 31 1 4.3958 -2.7896 -1.0252 32 1 5.1754 -2.3605 0.5163 33 1 3.6149 -3.2167 0.5162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334100276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = -37.383922 kcal Electronic energy + Delta-G solvation = -18229.707355 eV Core-core repulsion = 15189.731879 eV Total energy + Delta-G solvation = -3039.975476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17915 -36.10978 -35.20486 -34.87037 -34.19913 -33.39549 -29.70051 -29.28060 -29.05176 -27.59651 -23.67369 -22.39202 -21.90102 -18.17182 -17.81713 -17.00950 -16.14777 -15.89817 -15.39009 -15.23984 -15.15155 -14.83227 -14.23018 -13.53757 -13.45363 -13.29020 -12.67605 -12.56540 -12.47213 -12.41899 -12.28100 -12.19782 -11.44967 -11.22382 -11.16244 -11.04027 -10.93102 -10.89172 -10.63386 -10.06835 -9.84532 -9.38833 -9.32410 -9.04355 -8.74543 -6.37211 -4.47125 0.51700 0.89784 1.19887 3.20616 3.25943 3.32194 3.59589 3.63507 3.77447 3.86895 4.13380 4.22782 4.58025 4.68040 4.89434 4.91242 5.00363 5.20558 5.27898 5.32436 5.40647 5.44958 5.48140 5.56084 5.72083 5.85479 5.89350 6.39737 6.56399 6.62253 6.99770 7.43299 7.69782 8.07566 8.54567 9.20360 10.74579 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.004591 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.058174 B = 6097.695205 C = 6370.861966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.179 3.821 3 C -0.224 4.224 4 C 0.196 3.804 5 C -0.590 4.590 6 S 2.391 3.609 7 O -0.940 6.940 8 O -0.950 6.950 9 C -0.395 4.395 10 C -0.531 4.531 11 H 0.073 0.927 12 C 0.076 3.924 13 N -0.881 5.881 14 Si 0.907 3.093 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.266 1.266 18 N -0.510 5.510 19 C 0.322 3.678 20 C -0.084 4.084 21 N -0.524 5.524 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.155 0.845 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.269 0.731 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.179 -10.909 -7.069 15.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.033 3.967 3 C -0.246 4.246 4 C 0.049 3.951 5 C -0.711 4.711 6 S 2.574 3.426 7 O -0.938 6.938 8 O -0.947 6.947 9 C -0.531 4.531 10 C -0.570 4.570 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.517 5.517 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.190 1.190 18 N -0.226 5.226 19 C 0.055 3.945 20 C -0.143 4.143 21 N -0.240 5.240 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.172 0.828 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.919 -12.108 -6.434 16.357 hybrid contribution 0.133 1.716 -0.192 1.731 sum -8.786 -10.392 -6.626 15.136 Atomic orbital electron populations 1.20792 0.87475 1.04385 1.03621 1.21742 0.97714 0.87847 0.89438 1.22681 0.95246 1.01355 1.05362 1.20556 0.90939 0.92281 0.91287 1.29775 1.09174 1.01018 1.31177 1.09292 0.77242 0.79963 0.76067 1.93505 1.68239 1.60702 1.71314 1.93482 1.45000 1.84634 1.71571 1.27492 1.08379 1.10287 1.06913 1.20353 1.37182 1.10462 0.89003 0.90920 1.24927 0.94433 0.95873 0.97795 1.69943 1.35806 1.18519 1.27451 0.86333 0.79487 0.78159 0.82772 1.19839 1.20594 1.19041 1.68066 1.41692 0.98078 1.14757 1.23280 0.86573 0.94614 0.90032 1.20579 1.00248 0.89647 1.03795 1.68091 1.09655 1.30393 1.15874 0.89669 0.89820 0.89699 0.82753 0.83452 0.83062 0.89351 0.89459 0.92127 0.89650 0.89171 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.22 36.01 0.37 -0.59 16 2 C 0.18 2.44 6.82 -82.24 -0.56 1.88 16 3 C -0.22 -3.29 9.54 -39.31 -0.38 -3.66 16 4 C 0.20 3.30 6.08 -82.24 -0.50 2.80 16 5 C -0.59 -9.21 6.14 36.01 0.22 -8.98 16 6 S 2.39 49.69 4.62 -107.50 -0.50 49.19 16 7 O -0.94 -22.62 18.10 -57.83 -1.05 -23.67 16 8 O -0.95 -21.69 18.10 -57.83 -1.05 -22.74 16 9 C -0.40 -9.14 5.56 36.01 0.20 -8.94 16 10 C -0.53 -14.50 9.13 -34.44 -0.31 -14.81 16 11 H 0.07 1.98 7.71 -52.48 -0.40 1.58 16 12 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 13 N -0.88 -24.38 13.29 55.43 0.74 -23.65 16 14 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 N -0.51 -8.93 10.27 -6.99 -0.07 -9.00 16 19 C 0.32 4.98 7.64 -157.19 -1.20 3.77 16 20 C -0.08 -0.94 10.32 36.00 0.37 -0.56 16 21 N -0.52 -7.79 10.27 -6.98 -0.07 -7.86 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 25 H 0.15 1.86 8.06 -52.49 -0.42 1.43 16 26 H 0.15 1.76 8.10 -51.93 -0.42 1.34 16 27 H 0.15 2.11 8.14 -51.93 -0.42 1.68 16 28 H 0.09 1.99 8.14 -51.92 -0.42 1.56 16 29 H 0.09 1.92 8.14 -51.92 -0.42 1.50 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -35.44 307.83 -8.45 -43.89 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.19 Total: 0.53 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -1.89 Total: -27.13 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.59 Total: -40.51 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -2.09 Total: -46.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 49.69 SS G_CDS: -0.50 Total: 49.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.44 -8.45 -43.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334100276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.510 kcal (2) G-P(sol) polarization free energy of solvation -35.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds