Wall clock time and date at job start Mon Mar 30 2020 01:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38623 * 120.44713 * 2 1 4 4 C 1.38580 * 118.39507 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.44225 * 180.02562 * 4 3 2 6 6 S 1.81404 * 109.46895 * 90.00275 * 5 4 3 7 7 O 1.42098 * 108.57840 * 65.51073 * 6 5 4 8 8 O 1.42100 * 108.57577 * 294.47950 * 6 5 4 9 9 C 1.81399 * 101.91985 * 179.97438 * 6 5 4 10 10 C 1.50702 * 109.47410 * 179.97438 * 9 6 5 11 11 H 1.08003 * 119.99606 * 359.97438 * 10 9 6 12 12 C 1.37873 * 120.00217 * 180.02562 * 10 9 6 13 13 N 1.31516 * 119.99909 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99980 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47104 * 89.99581 * 14 12 10 16 16 H 1.48500 * 109.46876 * 209.99805 * 14 12 10 17 17 H 1.48506 * 109.46930 * 329.99720 * 14 12 10 18 18 N 1.32343 * 119.10694 * 0.27239 * 4 3 2 19 19 C 1.31784 * 120.82045 * 359.44780 * 18 4 3 20 20 C 1.50697 * 119.12179 * 180.31032 * 19 18 4 21 21 N 1.31811 * 121.74928 * 0.56723 * 19 18 4 22 22 H 1.08996 * 109.46654 * 90.00304 * 1 2 3 23 23 H 1.08996 * 109.46936 * 209.99944 * 1 2 3 24 24 H 1.08991 * 109.46859 * 330.00486 * 1 2 3 25 25 H 1.07991 * 120.80187 * 359.95306 * 3 2 1 26 26 H 1.08997 * 109.47474 * 329.99765 * 5 4 3 27 27 H 1.08995 * 109.46859 * 209.99616 * 5 4 3 28 28 H 1.09004 * 109.47089 * 299.99788 * 9 6 5 29 29 H 1.09004 * 109.47568 * 59.99798 * 9 6 5 30 30 H 0.97002 * 119.99804 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.47084 * 270.24841 * 20 19 18 32 32 H 1.09001 * 109.47339 * 30.25208 * 20 19 18 33 33 H 1.09003 * 109.47120 * 150.25079 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1951 0.0000 4 6 3.5944 1.1454 0.0005 5 6 4.4040 2.4165 0.0012 6 16 4.7282 2.9261 1.7117 7 8 5.5601 1.9507 2.3247 8 8 3.4924 3.2679 2.3242 9 6 5.6950 4.4424 1.4741 10 6 6.0619 5.0199 2.8169 11 1 5.7448 4.5245 3.7226 12 6 6.8015 6.1813 2.8891 13 7 7.1873 6.7848 1.7861 14 14 7.2569 6.8966 4.5535 15 1 8.5584 6.3341 4.9948 16 1 7.3675 8.3734 4.4440 17 1 6.2066 6.5510 5.5449 18 7 4.1964 -0.0332 -0.0045 19 6 3.4956 -1.1492 0.0010 20 6 4.2206 -2.4704 0.0021 21 7 2.1776 -1.1407 0.0005 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6901 2.1418 -0.0008 26 1 3.8489 3.2012 -0.5127 27 1 5.3500 2.2449 -0.5123 28 1 6.6031 4.2109 0.9174 29 1 5.1023 5.1678 0.9168 30 1 7.7073 7.6021 1.8369 31 1 4.3958 -2.7896 -1.0252 32 1 5.1754 -2.3605 0.5163 33 1 3.6149 -3.2167 0.5162 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334100276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:10 Heat of formation + Delta-G solvation = -63.844106 kcal Electronic energy + Delta-G solvation = -18230.854754 eV Core-core repulsion = 15189.731879 eV Total energy + Delta-G solvation = -3041.122875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28131 -37.87376 -36.93857 -36.01841 -35.40417 -35.24004 -31.18471 -30.69976 -30.12635 -28.63895 -25.60425 -23.49753 -23.01330 -19.82440 -19.07187 -18.84444 -17.73615 -17.29516 -16.89048 -16.75732 -16.34378 -16.21762 -15.85159 -14.59724 -14.43840 -14.35255 -14.27055 -14.04589 -13.72930 -13.47016 -13.37700 -13.30338 -13.10049 -13.00773 -12.94749 -12.73258 -12.55329 -12.30195 -11.98508 -11.79349 -11.39351 -10.96201 -10.77212 -10.46045 -10.33296 -8.41427 -6.57602 -1.02988 -0.20824 -0.02774 1.38558 1.39358 1.51311 2.03702 2.29840 2.47030 2.57415 2.88026 2.91726 2.97254 3.13911 3.31605 3.71713 3.93235 3.98727 4.27222 4.36581 4.46517 4.64776 4.66944 4.72796 4.75768 4.75992 4.87182 4.92680 5.12523 5.35945 5.41130 5.73662 5.89387 6.51147 6.95352 7.13060 8.70905 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.036071 B = 0.004591 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.058174 B = 6097.695205 C = 6370.861966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.174 3.826 3 C -0.230 4.230 4 C 0.163 3.837 5 C -0.560 4.560 6 S 2.411 3.589 7 O -0.983 6.983 8 O -0.977 6.977 9 C -0.413 4.413 10 C -0.565 4.565 11 H 0.059 0.941 12 C 0.028 3.972 13 N -0.906 5.906 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.266 1.266 17 H -0.266 1.266 18 N -0.541 5.541 19 C 0.305 3.695 20 C -0.083 4.083 21 N -0.530 5.530 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.180 0.820 26 H 0.190 0.810 27 H 0.170 0.830 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.275 0.725 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.511 -11.293 -7.951 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.027 3.973 3 C -0.253 4.253 4 C 0.017 3.983 5 C -0.688 4.688 6 S 2.598 3.402 7 O -0.980 6.980 8 O -0.974 6.974 9 C -0.547 4.547 10 C -0.603 4.603 11 H 0.077 0.923 12 C -0.175 4.175 13 N -0.543 5.543 14 Si 0.783 3.217 15 H -0.191 1.191 16 H -0.190 1.190 17 H -0.190 1.190 18 N -0.257 5.257 19 C 0.038 3.962 20 C -0.141 4.141 21 N -0.247 5.247 22 H 0.127 0.873 23 H 0.107 0.893 24 H 0.119 0.881 25 H 0.197 0.803 26 H 0.208 0.792 27 H 0.188 0.812 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.219 -12.451 -7.258 17.668 hybrid contribution 0.444 1.721 -0.033 1.778 sum -9.775 -10.730 -7.291 16.244 Atomic orbital electron populations 1.20957 0.84198 1.05465 1.05384 1.22529 0.99824 0.87243 0.87686 1.23066 0.94583 1.03007 1.04642 1.20796 0.92132 0.92309 0.93041 1.29425 1.11191 1.02268 1.25895 1.08222 0.75806 0.78197 0.77928 1.93448 1.69348 1.60965 1.74260 1.93437 1.45089 1.84791 1.74051 1.27544 1.09380 1.12611 1.05127 1.20739 1.37848 1.11258 0.90505 0.92263 1.25743 0.94285 0.96220 1.01254 1.69995 1.36281 1.18995 1.29043 0.85517 0.79290 0.78171 0.78770 1.19113 1.19049 1.19025 1.68073 1.42745 0.98893 1.16022 1.24025 0.87228 0.95408 0.89521 1.20719 0.99920 0.88189 1.05285 1.68227 1.09439 1.30980 1.16034 0.87329 0.89259 0.88094 0.80263 0.79238 0.81216 0.89315 0.88622 0.91628 0.87582 0.89480 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 10.22 71.24 0.73 -0.81 16 2 C 0.17 4.34 6.82 42.58 0.29 4.63 16 3 C -0.23 -6.23 9.54 22.44 0.21 -6.02 16 4 C 0.16 5.23 6.08 42.56 0.26 5.49 16 5 C -0.56 -16.45 6.14 71.24 0.44 -16.01 16 6 S 2.41 100.36 4.62 -56.49 -0.26 100.09 16 7 O -0.98 -48.39 18.10 -127.37 -2.30 -50.69 16 8 O -0.98 -44.65 18.10 -127.37 -2.31 -46.96 16 9 C -0.41 -19.34 5.56 71.24 0.40 -18.95 16 10 C -0.57 -31.51 9.13 25.60 0.23 -31.28 16 11 H 0.06 3.35 7.71 -2.91 -0.02 3.32 16 12 C 0.03 1.55 5.46 84.65 0.46 2.01 16 13 N -0.91 -50.36 13.29 21.45 0.28 -50.07 16 14 Si 0.96 42.66 29.54 68.60 2.03 44.68 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 N -0.54 -18.46 10.27 -176.03 -1.81 -20.26 16 19 C 0.31 9.07 7.64 138.75 1.06 10.13 16 20 C -0.08 -1.73 10.32 71.23 0.74 -1.00 16 21 N -0.53 -14.84 10.27 -176.01 -1.81 -16.65 16 22 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 25 H 0.18 3.74 8.06 -2.92 -0.02 3.72 16 26 H 0.19 3.88 8.10 -2.39 -0.02 3.86 16 27 H 0.17 4.40 8.14 -2.39 -0.02 4.38 16 28 H 0.09 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.10 4.23 8.14 -2.39 -0.02 4.21 16 30 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -77.72 307.83 -0.25 -77.97 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.11 Total: 13.69 kcal Atomic # 6 Polarization: -56.62 SS G_CDS: 4.82 Total: -51.80 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.33 Total: -86.99 kcal Atomic # 8 Polarization: -93.04 SS G_CDS: -4.61 Total: -97.65 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 100.36 SS G_CDS: -0.26 Total: 100.09 kcal Total: -77.72 -0.25 -77.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334100276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.124 kcal (2) G-P(sol) polarization free energy of solvation -77.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds