Wall clock time and date at job start Mon Mar 30 2020 01:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47240 * 2 1 4 4 N 1.46892 * 109.47131 * 240.00256 * 2 1 3 5 5 C 1.52999 * 109.47087 * 120.00027 * 2 1 3 6 6 O 1.42897 * 109.47025 * 54.99935 * 5 2 1 7 7 N 1.41597 * 114.00230 * 179.97438 * 6 5 2 8 8 C 1.34777 * 120.00159 * 179.97438 * 7 6 5 9 9 O 1.21761 * 120.00175 * 0.02562 * 8 7 6 10 10 C 1.46238 * 120.00104 * 179.97438 * 8 7 6 11 11 S 1.75666 * 125.22635 * 359.97438 * 10 8 7 12 12 C 1.75476 * 92.09455 * 180.02562 * 11 10 8 13 13 C 1.32768 * 111.35914 * 359.70945 * 12 11 10 14 14 C 1.39539 * 125.23177 * 180.02562 * 10 8 7 15 15 C 1.40540 * 123.71469 * 359.97438 * 14 10 8 16 16 H 1.08006 * 119.99980 * 335.72638 * 15 14 10 17 17 C 1.40313 * 120.00249 * 155.71571 * 15 14 10 18 18 N 1.30638 * 119.99728 * 339.52741 * 17 15 14 19 19 Si 1.86795 * 119.99844 * 159.52494 * 17 15 14 20 20 H 1.48502 * 109.47137 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47110 * 300.00064 * 19 17 15 22 22 H 1.48502 * 109.47251 * 60.00188 * 19 17 15 23 23 H 1.08993 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47088 * 300.00377 * 1 2 3 25 25 H 1.09008 * 109.47352 * 59.99525 * 1 2 3 26 26 H 1.00900 * 111.00212 * 59.99718 * 4 2 1 27 27 H 1.00900 * 111.00227 * 183.95373 * 4 2 1 28 28 H 1.08997 * 109.47152 * 295.00258 * 5 2 1 29 29 H 1.08996 * 109.47304 * 174.99866 * 5 2 1 30 30 H 0.96998 * 120.00222 * 0.02562 * 7 6 5 31 31 H 1.07996 * 124.32154 * 179.97438 * 12 11 10 32 32 H 1.08001 * 122.78540 * 180.25766 * 13 12 11 33 33 H 0.96997 * 119.99945 * 353.99832 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 8 1.4702 -2.0303 1.3094 7 7 1.8806 -2.7860 2.4343 8 6 1.4154 -4.0386 2.6109 9 8 0.6426 -4.5206 1.8028 10 6 1.8398 -4.8192 3.7724 11 16 2.9466 -4.2627 5.0178 12 6 2.8304 -5.7809 5.8900 13 6 2.0109 -6.6281 5.2789 14 6 1.4285 -6.1210 4.0612 15 6 0.5396 -6.8548 3.2571 16 1 -0.1564 -6.3390 2.6121 17 6 0.5565 -8.2574 3.2921 18 7 1.6131 -8.8871 3.7322 19 14 -0.9319 -9.2241 2.7096 20 1 -0.6631 -10.6780 2.8482 21 1 -2.1126 -8.8588 3.5329 22 1 -1.2036 -8.9040 1.2851 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6961 -0.2349 -2.0385 27 1 3.0262 -0.7625 -1.1909 28 1 1.7516 -0.1584 2.1369 29 1 3.1263 -0.7995 1.2056 30 1 2.4960 -2.4020 3.0783 31 1 3.3549 -5.9969 6.8090 32 1 1.8014 -7.6167 5.6599 33 1 2.4168 -8.3907 3.9525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340645902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:14 Heat of formation + Delta-G solvation = -17.696132 kcal Electronic energy + Delta-G solvation = -18162.770050 eV Core-core repulsion = 15123.648301 eV Total energy + Delta-G solvation = -3039.121749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.37930 -37.38384 -36.26977 -34.87266 -33.05450 -31.19684 -29.23035 -28.77003 -26.48352 -25.46093 -22.58939 -20.73655 -20.38749 -19.07082 -18.02883 -17.12188 -16.30734 -15.94490 -15.48727 -14.79164 -14.50461 -14.21233 -13.90524 -13.73836 -13.23899 -12.97408 -12.82899 -12.24349 -12.00618 -11.92870 -11.60696 -11.50515 -11.15570 -11.04067 -10.74907 -10.49880 -10.42532 -10.11830 -9.77069 -9.18140 -8.76563 -8.50850 -8.04174 -7.80454 -7.39484 -7.34832 -4.62702 2.00183 2.68813 2.90917 3.07006 3.12789 3.34606 3.48357 3.67083 3.91658 4.33660 4.43523 4.77923 4.81255 5.01074 5.08586 5.33478 5.46456 5.60108 5.79430 5.80235 5.82182 6.27158 6.37851 6.66572 6.93606 7.03908 7.15521 7.24112 7.34740 7.65574 7.71880 7.93987 8.34827 8.43465 8.69952 9.61121 9.74985 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.005464 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.422946 B = 5122.983049 C = 6292.642318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.099 3.901 3 H 0.049 0.951 4 N -0.838 5.838 5 C 0.038 3.962 6 O -0.130 6.130 7 N -0.620 5.620 8 C 0.613 3.387 9 O -0.543 6.543 10 C -0.432 4.432 11 S -0.041 6.041 12 C -0.183 4.183 13 C -0.139 4.139 14 C 0.114 3.886 15 C -0.420 4.420 16 H 0.111 0.889 17 C 0.029 3.971 18 N -0.774 5.774 19 Si 1.074 2.926 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.268 1.268 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.341 0.659 27 H 0.341 0.659 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.392 0.608 31 H 0.143 0.857 32 H 0.133 0.867 33 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 11.087 -1.320 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 H 0.067 0.933 4 N -0.370 5.370 5 C -0.041 4.041 6 O -0.133 6.133 7 N -0.324 5.324 8 C 0.411 3.589 9 O -0.423 6.423 10 C -0.551 4.551 11 S 0.214 5.786 12 C -0.317 4.317 13 C -0.173 4.173 14 C 0.104 3.896 15 C -0.450 4.450 16 H 0.129 0.871 17 C -0.195 4.195 18 N -0.397 5.397 19 Si 0.896 3.104 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.193 1.193 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.230 0.770 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.129 9.811 -1.667 10.015 hybrid contribution 1.171 1.811 0.268 2.173 sum 2.300 11.622 -1.399 11.929 Atomic orbital electron populations 1.21769 0.93526 1.04040 1.01090 1.21295 0.96911 0.93756 0.89385 0.93333 1.58563 1.16125 1.58687 1.03581 1.22896 0.97776 0.85623 0.97772 1.90634 1.66392 1.24185 1.32102 1.47744 1.52104 1.13041 1.19511 1.16753 0.80202 0.77347 0.84640 1.90685 1.37059 1.69073 1.45479 1.21997 1.24147 1.03336 1.05637 1.82719 1.53434 1.18478 1.23981 1.24921 1.05397 0.97872 1.03522 1.21571 0.99187 1.00090 0.96409 1.17839 0.90259 0.90508 0.91016 1.21055 1.13113 0.93125 1.17725 0.87077 1.27592 1.02816 0.96460 0.92636 1.70442 1.03058 1.42303 1.23891 0.83498 0.73179 0.75687 0.78068 1.19612 1.19535 1.19273 0.90299 0.92259 0.92908 0.84623 0.84605 0.92405 0.93005 0.76976 0.83968 0.84926 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.29 37.16 0.35 -1.46 16 2 C 0.10 1.16 3.77 -67.72 -0.26 0.91 16 3 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 4 N -0.84 -9.98 9.20 -4.67 -0.04 -10.02 16 5 C 0.04 0.54 6.00 37.16 0.22 0.76 16 6 O -0.13 -2.63 10.18 -29.59 -0.30 -2.93 16 7 N -0.62 -13.41 6.38 30.17 0.19 -13.21 16 8 C 0.61 16.11 7.91 -13.05 -0.10 16.01 16 9 O -0.54 -16.25 14.87 -12.99 -0.19 -16.44 16 10 C -0.43 -11.06 6.51 -35.89 -0.23 -11.29 16 11 S -0.04 -0.86 22.25 -107.50 -2.39 -3.25 16 12 C -0.18 -3.77 11.07 28.86 0.32 -3.45 16 13 C -0.14 -3.25 8.19 -39.12 -0.32 -3.57 16 14 C 0.11 3.03 5.40 -106.21 -0.57 2.46 16 15 C -0.42 -11.45 8.44 -37.93 -0.32 -11.77 16 16 H 0.11 3.23 6.13 -52.48 -0.32 2.91 16 17 C 0.03 0.73 5.24 -17.28 -0.09 0.64 16 18 N -0.77 -19.44 12.49 55.57 0.69 -18.74 16 19 Si 1.07 21.43 29.98 -169.99 -5.10 16.34 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.34 3.22 9.04 -39.29 -0.36 2.87 16 27 H 0.34 3.59 8.99 -39.29 -0.35 3.24 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.39 7.33 7.62 -40.82 -0.31 7.02 16 31 H 0.14 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.13 3.02 6.79 -52.49 -0.36 2.66 16 33 H 0.30 7.65 6.23 -40.82 -0.25 7.40 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -31.84 299.60 -7.31 -39.15 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -3.68 Total: 15.40 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.01 Total: -10.79 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.84 Total: -41.98 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.49 Total: -19.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.10 Total: 16.34 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.39 Total: -3.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.84 -7.31 -39.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340645902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.457 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds