Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47240 * 2 1 4 4 N 1.46892 * 109.47131 * 240.00256 * 2 1 3 5 5 C 1.52999 * 109.47087 * 120.00027 * 2 1 3 6 6 O 1.42897 * 109.47025 * 54.99935 * 5 2 1 7 7 N 1.41597 * 114.00230 * 179.97438 * 6 5 2 8 8 C 1.34777 * 120.00159 * 179.97438 * 7 6 5 9 9 O 1.21761 * 120.00175 * 0.02562 * 8 7 6 10 10 C 1.46238 * 120.00104 * 179.97438 * 8 7 6 11 11 S 1.75666 * 125.22635 * 359.97438 * 10 8 7 12 12 C 1.75476 * 92.09455 * 180.02562 * 11 10 8 13 13 C 1.32768 * 111.35914 * 359.70945 * 12 11 10 14 14 C 1.39539 * 125.23177 * 180.02562 * 10 8 7 15 15 C 1.40540 * 123.71469 * 359.97438 * 14 10 8 16 16 H 1.08006 * 119.99980 * 335.72638 * 15 14 10 17 17 C 1.40313 * 120.00249 * 155.71571 * 15 14 10 18 18 N 1.30638 * 119.99728 * 339.52741 * 17 15 14 19 19 Si 1.86795 * 119.99844 * 159.52494 * 17 15 14 20 20 H 1.48502 * 109.47137 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47110 * 300.00064 * 19 17 15 22 22 H 1.48502 * 109.47251 * 60.00188 * 19 17 15 23 23 H 1.08993 * 109.47127 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47088 * 300.00377 * 1 2 3 25 25 H 1.09008 * 109.47352 * 59.99525 * 1 2 3 26 26 H 1.00900 * 111.00212 * 59.99718 * 4 2 1 27 27 H 1.00900 * 111.00227 * 183.95373 * 4 2 1 28 28 H 1.08997 * 109.47152 * 295.00258 * 5 2 1 29 29 H 1.08996 * 109.47304 * 174.99866 * 5 2 1 30 30 H 0.96998 * 120.00222 * 0.02562 * 7 6 5 31 31 H 1.07996 * 124.32154 * 179.97438 * 12 11 10 32 32 H 1.08001 * 122.78540 * 180.25766 * 13 12 11 33 33 H 0.96997 * 119.99945 * 353.99832 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1994 5 6 2.0400 -0.7212 1.2492 6 8 1.4702 -2.0303 1.3094 7 7 1.8806 -2.7860 2.4343 8 6 1.4154 -4.0386 2.6109 9 8 0.6426 -4.5206 1.8028 10 6 1.8398 -4.8192 3.7724 11 16 2.9466 -4.2627 5.0178 12 6 2.8304 -5.7809 5.8900 13 6 2.0109 -6.6281 5.2789 14 6 1.4285 -6.1210 4.0612 15 6 0.5396 -6.8548 3.2571 16 1 -0.1564 -6.3390 2.6121 17 6 0.5565 -8.2574 3.2921 18 7 1.6131 -8.8871 3.7322 19 14 -0.9319 -9.2241 2.7096 20 1 -0.6631 -10.6780 2.8482 21 1 -2.1126 -8.8588 3.5329 22 1 -1.2036 -8.9040 1.2851 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.6961 -0.2349 -2.0385 27 1 3.0262 -0.7625 -1.1909 28 1 1.7516 -0.1584 2.1369 29 1 3.1263 -0.7995 1.2056 30 1 2.4960 -2.4020 3.0783 31 1 3.3549 -5.9969 6.8090 32 1 1.8014 -7.6167 5.6599 33 1 2.4168 -8.3907 3.9525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340645902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = -41.183044 kcal Electronic energy + Delta-G solvation = -18163.788519 eV Core-core repulsion = 15123.648301 eV Total energy + Delta-G solvation = -3040.140218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17767 -38.90923 -38.02800 -36.25283 -34.91216 -32.97134 -30.76877 -30.08262 -27.87800 -27.13633 -24.42119 -22.34739 -21.72355 -20.91099 -19.73270 -18.75132 -18.12047 -17.03663 -16.74177 -16.24150 -16.14084 -15.82611 -15.57460 -15.31825 -14.91936 -14.56826 -14.38913 -13.91574 -13.75095 -13.29728 -12.93526 -12.77850 -12.69359 -12.56494 -12.19748 -12.03012 -11.90059 -11.86369 -11.54581 -11.01225 -10.56621 -9.85989 -9.67064 -9.61325 -9.26576 -9.15618 -6.58877 0.15753 1.08702 1.20781 1.39032 1.47800 1.60239 1.80965 1.88771 2.25600 2.46401 3.11902 3.44668 3.66449 3.78954 3.96086 4.17276 4.31565 4.35323 4.50805 4.57248 4.82528 4.86862 4.87561 5.15431 5.29733 5.32541 5.33859 5.81047 5.82259 6.05075 6.22977 6.44300 6.54523 6.58221 6.78272 7.68217 7.80543 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.005464 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.422946 B = 5122.983049 C = 6292.642318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.103 3.897 3 H 0.091 0.909 4 N -0.861 5.861 5 C 0.024 3.976 6 O -0.156 6.156 7 N -0.606 5.606 8 C 0.602 3.398 9 O -0.595 6.595 10 C -0.468 4.468 11 S 0.030 5.970 12 C -0.160 4.160 13 C -0.170 4.170 14 C 0.093 3.907 15 C -0.462 4.462 16 H 0.079 0.921 17 C 0.004 3.996 18 N -0.781 5.781 19 Si 1.118 2.882 20 H -0.254 1.254 21 H -0.257 1.257 22 H -0.272 1.272 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.354 0.646 27 H 0.348 0.652 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.406 0.594 31 H 0.189 0.811 32 H 0.133 0.867 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 12.616 -0.265 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 H 0.108 0.892 4 N -0.395 5.395 5 C -0.053 4.053 6 O -0.161 6.161 7 N -0.309 5.309 8 C 0.400 3.600 9 O -0.479 6.479 10 C -0.587 4.587 11 S 0.286 5.714 12 C -0.295 4.295 13 C -0.203 4.203 14 C 0.082 3.918 15 C -0.492 4.492 16 H 0.097 0.903 17 C -0.216 4.216 18 N -0.403 5.403 19 Si 0.934 3.066 20 H -0.178 1.178 21 H -0.181 1.181 22 H -0.197 1.197 23 H 0.052 0.948 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.169 0.831 27 H 0.162 0.838 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.206 0.794 32 H 0.151 0.849 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.387 11.414 -0.586 11.676 hybrid contribution 0.932 1.611 -0.066 1.863 sum 3.319 13.026 -0.652 13.457 Atomic orbital electron populations 1.21755 0.94347 1.01482 1.02735 1.21378 0.96220 0.95208 0.88151 0.89163 1.58531 1.16886 1.59679 1.04404 1.23397 0.98755 0.83147 1.00042 1.90649 1.67443 1.26894 1.31069 1.47248 1.51119 1.12278 1.20241 1.17043 0.79893 0.78553 0.84560 1.90644 1.39263 1.70673 1.47293 1.22464 1.25259 1.03762 1.07165 1.82304 1.50619 1.17504 1.20979 1.25506 1.03114 0.96813 1.04056 1.21425 1.01555 1.01146 0.96147 1.18326 0.90228 0.91248 0.92003 1.21036 1.14468 0.94513 1.19172 0.90285 1.28746 1.04594 0.96414 0.91854 1.70525 1.02965 1.41782 1.25043 0.82994 0.70784 0.75333 0.77525 1.17794 1.18088 1.19693 0.94823 0.91205 0.90788 0.83138 0.83810 0.90416 0.91438 0.75248 0.79382 0.84923 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.29 71.98 0.67 -2.76 16 2 C 0.10 2.17 3.77 44.92 0.17 2.34 16 3 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 4 N -0.86 -19.25 9.20 -168.69 -1.55 -20.80 16 5 C 0.02 0.64 6.00 71.98 0.43 1.07 16 6 O -0.16 -6.35 10.18 -21.45 -0.22 -6.56 16 7 N -0.61 -26.23 6.38 -176.66 -1.13 -27.36 16 8 C 0.60 32.57 7.91 86.32 0.68 33.26 16 9 O -0.59 -37.58 14.87 12.78 0.19 -37.39 16 10 C -0.47 -24.21 6.51 24.66 0.16 -24.05 16 11 S 0.03 1.17 22.25 -56.49 -1.26 -0.09 16 12 C -0.16 -6.17 11.07 66.64 0.74 -5.43 16 13 C -0.17 -7.85 8.19 22.61 0.19 -7.66 16 14 C 0.09 5.05 5.40 -20.89 -0.11 4.94 16 15 C -0.46 -26.45 8.44 23.34 0.20 -26.26 16 16 H 0.08 4.95 6.13 -2.91 -0.02 4.93 16 17 C 0.00 0.21 5.24 85.38 0.45 0.66 16 18 N -0.78 -39.89 12.49 21.89 0.27 -39.62 16 19 Si 1.12 44.14 29.98 68.60 2.06 46.19 16 20 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H 0.03 1.09 7.56 -2.39 -0.02 1.07 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.35 6.10 9.04 -89.69 -0.81 5.29 16 27 H 0.35 6.75 8.99 -89.69 -0.81 5.95 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.41 14.67 7.62 -92.71 -0.71 13.96 16 31 H 0.19 5.46 8.06 -2.91 -0.02 5.43 16 32 H 0.13 6.05 6.79 -2.91 -0.02 6.03 16 33 H 0.29 15.17 6.23 -92.71 -0.58 14.60 16 Total: -1.00 -73.30 299.60 0.98 -72.33 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.96 Total: 37.18 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 3.57 Total: -23.89 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.41 Total: -87.77 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -0.03 Total: -43.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.06 Total: 46.19 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.26 Total: -0.09 kcal Total: -73.30 0.98 -72.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340645902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.145 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds