Wall clock time and date at job start Mon Mar 30 2020 01:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 S 1.81408 * 109.47411 * 89.99664 * 6 5 4 8 8 O 1.42096 * 108.57523 * 294.48636 * 7 6 5 9 9 O 1.42093 * 108.57695 * 65.51129 * 7 6 5 10 10 C 1.81392 * 101.92158 * 179.97438 * 7 6 5 11 11 C 1.53003 * 109.47232 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47573 * 180.02562 * 11 10 7 13 13 H 1.08003 * 119.99584 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99974 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99940 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47081 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46877 * 119.99972 * 16 14 12 19 19 H 1.48501 * 109.46745 * 239.99873 * 16 14 12 20 20 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 21 21 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 22 22 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 23 23 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 24 24 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 25 25 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.46989 * 209.99307 * 6 5 4 27 27 H 1.08997 * 109.47678 * 329.99289 * 6 5 4 28 28 H 1.08997 * 109.47365 * 299.99893 * 10 7 6 29 29 H 1.09003 * 109.47685 * 59.99919 * 10 7 6 30 30 H 1.08997 * 109.46929 * 300.00247 * 11 10 7 31 31 H 1.09004 * 109.46968 * 59.99965 * 11 10 7 32 32 H 0.96999 * 119.99705 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.44813 * 180.29354 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 16 6.2993 -0.0037 1.6970 8 8 5.9263 1.2208 2.3140 9 8 5.9264 -1.2307 2.3087 10 6 8.0966 -0.0039 1.4515 11 6 8.7972 -0.0063 2.8117 12 6 10.2903 -0.0058 2.6079 13 1 10.6988 -0.0044 1.6080 14 6 11.1349 -0.0082 3.6976 15 7 10.6375 -0.0104 4.9151 16 14 12.9857 -0.0084 3.4448 17 1 13.2867 -0.0062 1.9907 18 1 13.5713 1.2027 4.0738 19 1 13.5704 -1.2223 4.0691 20 6 3.4712 -1.1904 0.0013 21 7 2.1484 -1.1514 0.0005 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.9907 2.1374 0.0001 26 1 6.0492 -0.8888 -0.5280 27 1 6.0492 0.8911 -0.5242 28 1 8.3867 -0.8928 0.8915 29 1 8.3875 0.8871 0.8950 30 1 8.5070 0.8829 3.3714 31 1 8.5064 -0.8971 3.3686 32 1 11.2317 -0.0118 5.6818 33 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340948890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:38 Heat of formation + Delta-G solvation = -35.018999 kcal Electronic energy + Delta-G solvation = -17925.071517 eV Core-core repulsion = 14885.198592 eV Total energy + Delta-G solvation = -3039.872925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31853 -36.60819 -35.66832 -34.75272 -33.94098 -33.93712 -31.25612 -30.61848 -26.69142 -25.53079 -24.92588 -22.55728 -21.43888 -18.56729 -18.05118 -17.11068 -16.95129 -16.08863 -15.73136 -15.71356 -15.25539 -14.59302 -14.46713 -13.91671 -13.56906 -13.47511 -13.03277 -12.94637 -12.59997 -12.55522 -11.82734 -11.69718 -11.62698 -11.42650 -11.12866 -11.07858 -11.04210 -10.99501 -10.43290 -10.41760 -9.80658 -9.45486 -9.41422 -9.08279 -8.53791 -6.15636 -4.21927 0.05342 0.77212 0.84997 3.08756 3.23041 3.30424 3.33295 3.46237 3.66102 3.85741 3.90160 4.10186 4.31111 4.34340 4.38699 4.62792 4.95736 5.10027 5.19626 5.26138 5.26445 5.27918 5.54661 5.59685 5.64931 5.65965 6.16247 6.40020 6.70649 7.28950 7.33856 7.76883 7.83540 8.12553 8.81928 9.43097 10.95227 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.059505 B = 0.003667 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.437555 B = 7632.892482 C = 7645.787418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.314 3.686 3 N -0.515 5.515 4 C 0.169 3.831 5 C -0.197 4.197 6 C -0.575 4.575 7 S 2.392 3.608 8 O -0.937 6.937 9 O -0.938 6.938 10 C -0.568 4.568 11 C 0.027 3.973 12 C -0.522 4.522 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.889 5.889 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.168 3.832 21 N -0.515 5.515 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.177 0.823 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.042 0.030 -12.968 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.229 5.229 4 C 0.002 3.998 5 C -0.202 4.202 6 C -0.700 4.700 7 S 2.577 3.423 8 O -0.935 6.935 9 O -0.935 6.935 10 C -0.701 4.701 11 C -0.011 4.011 12 C -0.562 4.562 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.001 3.999 21 N -0.229 5.229 22 H 0.105 0.895 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.194 0.806 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.565 0.027 -12.028 19.671 hybrid contribution 2.579 0.001 -0.886 2.727 sum -12.986 0.028 -12.914 18.315 Atomic orbital electron populations 1.20586 0.85413 1.04447 1.03901 1.23437 0.98510 0.83580 0.89797 1.68338 1.09592 1.30383 1.14578 1.23331 0.89629 0.98346 0.88535 1.20793 0.95167 0.96782 1.07447 1.29448 0.99250 1.12695 1.28570 1.09127 0.80416 0.75699 0.77094 1.93552 1.82609 1.45587 1.71713 1.93551 1.82619 1.45375 1.71921 1.30210 1.18276 1.10210 1.11425 1.19012 0.96415 0.99289 0.86401 1.21043 0.89713 1.52349 0.93069 0.91928 1.25075 0.99423 0.94870 0.95125 1.69971 1.35371 1.49424 0.97891 0.86408 0.84692 0.77807 0.78338 1.19630 1.20769 1.20776 1.23332 0.89633 0.98351 0.88536 1.68342 1.09587 1.30378 1.14576 0.89527 0.89411 0.89410 0.80618 0.83696 0.83698 0.85942 0.85945 0.94572 0.94573 0.92531 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.32 36.01 0.37 -0.34 16 2 C 0.31 3.93 7.64 -157.19 -1.20 2.73 16 3 N -0.52 -6.82 10.33 -10.72 -0.11 -6.93 16 4 C 0.17 2.10 11.01 -17.20 -0.19 1.91 16 5 C -0.20 -2.41 5.17 -104.36 -0.54 -2.95 16 6 C -0.57 -5.84 5.98 36.00 0.22 -5.63 16 7 S 2.39 38.34 4.70 -107.50 -0.51 37.83 16 8 O -0.94 -18.13 18.10 -57.83 -1.05 -19.18 16 9 O -0.94 -18.13 18.10 -57.83 -1.05 -19.18 16 10 C -0.57 -9.79 5.74 37.16 0.21 -9.57 16 11 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 12 C -0.52 -14.04 9.11 -34.44 -0.31 -14.36 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.17 2.10 11.01 -17.20 -0.19 1.91 16 21 N -0.52 -6.82 10.34 -10.72 -0.11 -6.94 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.18 1.74 8.06 -52.49 -0.42 1.31 16 26 H 0.14 1.02 8.10 -51.92 -0.42 0.60 16 27 H 0.14 1.02 8.10 -51.93 -0.42 0.60 16 28 H 0.12 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.12 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -36.50 307.51 -8.53 -45.03 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.19 Total: -1.39 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -1.87 Total: -24.24 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.51 Total: -39.28 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -2.09 Total: -38.36 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 38.34 SS G_CDS: -0.51 Total: 37.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.50 -8.53 -45.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340948890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.008 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds