Wall clock time and date at job start Mon Mar 30 2020 01:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31795 * 119.12441 * 2 1 4 4 C 1.32337 * 120.82153 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.09979 * 0.28399 * 4 3 2 6 6 C 1.50698 * 120.79551 * 179.72102 * 5 4 3 7 7 S 1.81408 * 109.47411 * 89.99664 * 6 5 4 8 8 O 1.42096 * 108.57523 * 294.48636 * 7 6 5 9 9 O 1.42093 * 108.57695 * 65.51129 * 7 6 5 10 10 C 1.81392 * 101.92158 * 179.97438 * 7 6 5 11 11 C 1.53003 * 109.47232 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47573 * 180.02562 * 11 10 7 13 13 H 1.08003 * 119.99584 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99974 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99940 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47081 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46877 * 119.99972 * 16 14 12 19 19 H 1.48501 * 109.46745 * 239.99873 * 16 14 12 20 20 C 1.38591 * 118.40118 * 359.43062 * 5 4 3 21 21 N 1.31796 * 119.12216 * 179.97438 * 2 1 3 22 22 H 1.08991 * 109.46602 * 90.00189 * 1 2 3 23 23 H 1.08994 * 109.47014 * 210.00070 * 1 2 3 24 24 H 1.09001 * 109.46707 * 330.00048 * 1 2 3 25 25 H 1.08002 * 120.44593 * 179.97438 * 4 3 2 26 26 H 1.09001 * 109.46989 * 209.99307 * 6 5 4 27 27 H 1.08997 * 109.47678 * 329.99289 * 6 5 4 28 28 H 1.08997 * 109.47365 * 299.99893 * 10 7 6 29 29 H 1.09003 * 109.47685 * 59.99919 * 10 7 6 30 30 H 1.08997 * 109.46929 * 300.00247 * 11 10 7 31 31 H 1.09004 * 109.46968 * 59.99965 * 11 10 7 32 32 H 0.96999 * 119.99705 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.44813 * 180.29354 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4713 1.1905 0.0005 5 6 4.1809 0.0000 -0.0050 6 6 5.6878 0.0000 -0.0109 7 16 6.2993 -0.0037 1.6970 8 8 5.9263 1.2208 2.3140 9 8 5.9264 -1.2307 2.3087 10 6 8.0966 -0.0039 1.4515 11 6 8.7972 -0.0063 2.8117 12 6 10.2903 -0.0058 2.6079 13 1 10.6988 -0.0044 1.6080 14 6 11.1349 -0.0082 3.6976 15 7 10.6375 -0.0104 4.9151 16 14 12.9857 -0.0084 3.4448 17 1 13.2867 -0.0062 1.9907 18 1 13.5713 1.2027 4.0738 19 1 13.5704 -1.2223 4.0691 20 6 3.4712 -1.1904 0.0013 21 7 2.1484 -1.1514 0.0005 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 3.9907 2.1374 0.0001 26 1 6.0492 -0.8888 -0.5280 27 1 6.0492 0.8911 -0.5242 28 1 8.3867 -0.8928 0.8915 29 1 8.3875 0.8871 0.8950 30 1 8.5070 0.8829 3.3714 31 1 8.5064 -0.8971 3.3686 32 1 11.2317 -0.0118 5.6818 33 1 3.9908 -2.1374 0.0021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340948890.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:37 Heat of formation + Delta-G solvation = -63.131037 kcal Electronic energy + Delta-G solvation = -17926.290547 eV Core-core repulsion = 14885.198592 eV Total energy + Delta-G solvation = -3041.091954 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21769 -37.98603 -37.03303 -35.86923 -35.61995 -34.86399 -33.10399 -31.42580 -27.88762 -27.09686 -25.83789 -23.77623 -22.95298 -19.86213 -18.97178 -18.85664 -17.84403 -17.50076 -17.02576 -17.01568 -16.47345 -16.22040 -15.51758 -15.14268 -14.75275 -14.45372 -14.28703 -13.85209 -13.70236 -13.64752 -13.23244 -13.10656 -13.03204 -12.92620 -12.72346 -12.39552 -12.19815 -12.13852 -12.03136 -11.99610 -11.65730 -11.04653 -10.64423 -10.38008 -10.19465 -8.24639 -6.38907 -1.15032 -0.17102 -0.06464 1.42269 1.42817 1.56068 1.89321 2.38722 2.53113 2.69956 2.92721 3.02754 3.09000 3.10939 3.35616 3.48938 3.63612 4.09477 4.16294 4.17654 4.33680 4.54906 4.56237 4.68826 4.84684 4.85334 4.97520 5.33022 5.33748 5.34911 5.71133 5.79877 6.07458 6.76986 6.92469 7.31759 8.87898 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.059505 B = 0.003667 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.437555 B = 7632.892482 C = 7645.787418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.534 5.534 4 C 0.159 3.841 5 C -0.213 4.213 6 C -0.529 4.529 7 S 2.390 3.610 8 O -0.984 6.984 9 O -0.984 6.984 10 C -0.572 4.572 11 C 0.017 3.983 12 C -0.537 4.537 13 H 0.082 0.918 14 C -0.008 4.008 15 N -0.937 5.937 16 Si 0.975 3.025 17 H -0.251 1.251 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.158 3.842 21 N -0.534 5.534 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.198 0.802 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.266 0.734 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.712 0.039 -16.161 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 N -0.249 5.249 4 C -0.008 4.008 5 C -0.218 4.218 6 C -0.660 4.660 7 S 2.581 3.419 8 O -0.981 6.981 9 O -0.981 6.981 10 C -0.703 4.703 11 C -0.021 4.021 12 C -0.576 4.576 13 H 0.100 0.900 14 C -0.206 4.206 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.175 1.175 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.008 4.008 21 N -0.249 5.249 22 H 0.124 0.876 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.215 0.785 26 H 0.207 0.793 27 H 0.207 0.793 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.075 0.925 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.187 0.037 -15.166 21.463 hybrid contribution 2.306 -0.002 0.024 2.306 sum -12.881 0.035 -15.142 19.880 Atomic orbital electron populations 1.20732 0.83080 1.05129 1.05292 1.24179 1.00144 0.83366 0.88723 1.68416 1.10185 1.30773 1.15482 1.23856 0.89788 0.99560 0.87616 1.20954 0.95979 0.96645 1.08242 1.29065 0.97752 1.17354 1.21867 1.08730 0.79454 0.73948 0.79811 1.93494 1.82687 1.46856 1.75035 1.93493 1.82696 1.46655 1.75228 1.30088 1.19574 1.13286 1.07351 1.18836 0.96907 0.96105 0.90278 1.21627 0.91028 1.51023 0.93879 0.90006 1.26168 1.05084 0.94539 0.94815 1.70134 1.37352 1.51197 0.99047 0.85251 0.78027 0.77610 0.79267 1.17463 1.20610 1.20623 1.23854 0.89795 0.99564 0.87628 1.68420 1.10178 1.30773 1.15483 0.87621 0.88705 0.88701 0.78510 0.79262 0.79261 0.82872 0.82875 0.97993 0.97996 0.92542 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.32 71.24 0.74 -0.55 16 2 C 0.30 7.15 7.64 138.75 1.06 8.21 16 3 N -0.53 -13.34 10.33 -187.84 -1.94 -15.28 16 4 C 0.16 3.60 11.01 84.70 0.93 4.53 16 5 C -0.21 -4.57 5.17 -19.69 -0.10 -4.67 16 6 C -0.53 -8.38 5.98 71.24 0.43 -7.95 16 7 S 2.39 74.31 4.70 -56.49 -0.27 74.05 16 8 O -0.98 -38.51 18.10 -127.37 -2.31 -40.82 16 9 O -0.98 -38.50 18.10 -127.37 -2.30 -40.81 16 10 C -0.57 -18.84 5.74 71.98 0.41 -18.42 16 11 C 0.02 0.87 4.98 29.85 0.15 1.02 16 12 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 13 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.01 16 15 N -0.94 -57.26 13.29 21.45 0.28 -56.97 16 16 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 17 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.16 3.60 11.01 84.70 0.93 4.53 16 21 N -0.53 -13.35 10.34 -187.84 -1.94 -15.29 16 22 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 26 H 0.19 1.48 8.10 -2.39 -0.02 1.46 16 27 H 0.19 1.48 8.10 -2.39 -0.02 1.46 16 28 H 0.15 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.15 4.01 8.14 -2.39 -0.02 3.99 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 32 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.20 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -84.68 307.51 -0.10 -84.78 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.11 Total: 7.71 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 5.24 Total: -42.00 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -3.60 Total: -87.54 kcal Atomic # 8 Polarization: -77.02 SS G_CDS: -4.61 Total: -81.63 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 74.31 SS G_CDS: -0.27 Total: 74.05 kcal Total: -84.68 -0.10 -84.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340948890.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -84.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds