Wall clock time and date at job start Mon Mar 30 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81397 * 109.47309 * 220.94344 * 3 2 1 5 5 C 1.81396 * 102.99966 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.47423 * 125.65109 * 359.97383 * 8 6 5 10 10 C 1.55123 * 104.72654 * 155.81318 * 9 8 6 11 11 C 1.55156 * 101.48498 * 37.29727 * 10 9 8 12 12 O 1.42901 * 110.72261 * 82.69670 * 11 10 9 13 13 C 1.50709 * 110.87197 * 205.90029 * 11 10 9 14 14 H 1.07998 * 119.99690 * 355.05650 * 13 11 10 15 15 C 1.37873 * 119.99818 * 175.06059 * 13 11 10 16 16 N 1.31518 * 120.00226 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99710 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47014 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46929 * 120.00183 * 17 15 13 20 20 H 1.48493 * 109.47278 * 240.00415 * 17 15 13 21 21 C 1.47025 * 125.65000 * 180.27553 * 8 6 5 22 22 H 1.09007 * 109.46792 * 100.94324 * 3 2 1 23 23 H 1.08994 * 109.47251 * 340.94670 * 3 2 1 24 24 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 25 25 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 26 26 H 1.09004 * 110.36802 * 274.74548 * 9 8 6 27 27 H 1.09004 * 110.36924 * 37.06499 * 9 8 6 28 28 H 1.09005 * 111.19378 * 279.19151 * 10 9 8 29 29 H 1.08999 * 110.93906 * 155.28614 * 10 9 8 30 30 H 0.96697 * 113.99408 * 185.02602 * 12 11 10 31 31 H 0.96997 * 119.99596 * 179.97438 * 16 15 13 32 32 H 1.09004 * 109.88256 * 300.44464 * 21 8 6 33 33 H 1.08999 * 109.88203 * 61.60563 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2122 1.2927 1.1207 5 6 5.0146 1.1396 0.9861 6 6 5.6735 2.1640 1.8736 7 8 4.9940 2.9224 2.5325 8 7 7.0178 2.2333 1.9398 9 6 7.9600 1.3725 1.2019 10 6 9.2668 2.2036 1.1132 11 6 9.2829 2.9028 2.4982 12 8 9.8243 2.0351 3.4963 13 6 10.0584 4.1937 2.4391 14 1 10.5762 4.4714 1.5329 15 6 10.1068 5.0198 3.5418 16 7 9.4759 4.6817 4.6451 17 14 11.0686 6.6196 3.4687 18 1 11.6824 6.7671 2.1245 19 1 10.1521 7.7602 3.7218 20 1 12.1356 6.6033 4.5014 21 6 7.7876 3.1759 2.7648 22 1 2.9712 0.1959 -1.0091 23 1 2.9718 -0.9705 0.3355 24 1 5.3173 1.3066 -0.0477 25 1 5.3186 0.1400 1.2967 26 1 8.1338 0.4451 1.7476 27 1 7.5776 1.1601 0.2034 28 1 9.2146 2.9352 0.3068 29 1 10.1340 1.5543 0.9933 30 1 9.7860 2.3951 4.3930 31 1 9.5103 5.2628 5.4209 32 1 7.5421 4.2002 2.4843 33 1 7.5635 3.0143 3.8192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346082626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:19 Heat of formation + Delta-G solvation = -51.042661 kcal Electronic energy + Delta-G solvation = -18087.280646 eV Core-core repulsion = 15046.712882 eV Total energy + Delta-G solvation = -3040.567763 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.51372 -37.33861 -36.91294 -34.40617 -32.29052 -31.02848 -30.44502 -29.47311 -27.70534 -24.99197 -22.76197 -19.83212 -19.31100 -18.13607 -17.29439 -16.70553 -16.40661 -15.88401 -15.49551 -15.13665 -14.78672 -14.31367 -14.21122 -13.76312 -13.14743 -13.11411 -12.99060 -12.69688 -12.33226 -12.21463 -12.04445 -11.74416 -11.49495 -11.11969 -10.90671 -10.77172 -10.51371 -10.27208 -10.20828 -9.60980 -9.40660 -8.74291 -8.39503 -8.07443 -7.88327 -6.34308 -4.43155 0.80986 2.09242 2.41296 2.80644 2.90949 3.16987 3.26471 3.29164 3.46100 3.49037 4.22697 4.61102 4.65049 4.80783 4.87905 4.94247 5.08301 5.25915 5.58134 5.69140 5.89457 6.02337 6.39089 6.63902 6.75744 6.82666 7.15291 7.17520 7.28498 7.67181 7.92584 8.03963 8.49283 8.61395 9.21884 9.31567 10.73513 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039423 B = 0.003848 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.076982 B = 7275.540625 C = 7605.678331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.225 3.775 3 C -0.028 4.028 4 S -0.136 6.136 5 C -0.125 4.125 6 C 0.534 3.466 7 O -0.531 6.531 8 N -0.606 5.606 9 C 0.098 3.902 10 C -0.118 4.118 11 C 0.247 3.753 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.070 3.930 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.105 3.895 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.383 0.617 31 H 0.270 0.730 32 H 0.069 0.931 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.557 -9.653 -9.160 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.094 4.094 3 C -0.179 4.179 4 S 0.088 5.912 5 C -0.276 4.276 6 C 0.319 3.681 7 O -0.408 6.408 8 N -0.340 5.340 9 C -0.025 4.025 10 C -0.155 4.155 11 C 0.207 3.793 12 O -0.394 6.394 13 C -0.577 4.577 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.532 5.532 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.016 4.016 22 H 0.145 0.855 23 H 0.145 0.855 24 H 0.131 0.869 25 H 0.131 0.869 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.208 -8.873 -8.534 14.266 hybrid contribution 1.642 0.350 -0.214 1.692 sum -5.566 -8.523 -8.748 13.422 Atomic orbital electron populations 1.81264 1.12150 1.07746 1.07863 1.27781 0.93774 0.93937 0.93889 1.20827 0.86067 1.05057 1.05918 1.88094 1.02396 1.43599 1.57103 1.23618 0.95283 1.03927 1.04788 1.19066 0.81574 0.84448 0.82963 1.90749 1.62168 1.43052 1.44859 1.48738 1.03866 1.36337 1.45075 1.22436 0.90630 0.94415 0.94990 1.22786 0.95208 0.98695 0.98858 1.19518 0.87288 0.88104 0.84386 1.86103 1.84863 1.47682 1.20738 1.21518 1.32593 1.04003 0.99541 0.91449 1.25079 0.94585 0.98464 0.95172 1.69696 1.41951 1.38531 1.03009 0.86345 0.79648 0.82588 0.78326 1.19578 1.20739 1.20720 1.23081 0.92873 0.91505 0.94177 0.85513 0.85509 0.86889 0.86882 0.91381 0.91913 0.90327 0.90406 0.76669 0.91976 0.91279 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.31 18.54 42.16 0.78 -4.52 16 2 C 0.22 2.22 15.44 -20.76 -0.32 1.90 16 3 C -0.03 -0.18 6.42 34.37 0.22 0.04 16 4 S -0.14 -1.59 20.83 -107.50 -2.24 -3.83 16 5 C -0.12 -1.37 5.43 36.01 0.20 -1.17 16 6 C 0.53 9.32 7.87 -10.98 -0.09 9.23 16 7 O -0.53 -11.62 16.19 5.55 0.09 -11.53 16 8 N -0.61 -11.09 3.32 -170.38 -0.57 -11.66 16 9 C 0.10 1.46 6.69 -2.41 -0.02 1.44 16 10 C -0.12 -2.09 6.24 -24.47 -0.15 -2.25 16 11 C 0.25 5.59 0.85 -89.93 -0.08 5.51 16 12 O -0.58 -13.82 13.07 -35.23 -0.46 -14.28 16 13 C -0.54 -13.43 8.13 -34.44 -0.28 -13.71 16 14 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 15 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 16 N -0.89 -23.08 10.96 55.43 0.61 -22.47 16 17 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.10 2.38 5.24 -3.06 -0.02 2.36 16 22 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.11 0.92 7.86 -51.92 -0.41 0.51 16 25 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.68 7.49 -51.93 -0.39 0.29 16 28 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.38 9.36 7.45 45.56 0.34 9.70 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.07 1.74 7.82 -51.93 -0.41 1.33 16 33 H 0.07 1.70 7.91 -51.93 -0.41 1.29 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -31.05 304.72 -6.19 -37.24 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -3.35 Total: 6.54 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.63 Total: 5.04 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.82 Total: -38.66 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.37 Total: -25.81 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.24 Total: -3.83 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.05 -6.19 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.799 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds