Wall clock time and date at job start Mon Mar 30 2020 00:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81397 * 109.47309 * 220.94344 * 3 2 1 5 5 C 1.81396 * 102.99966 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.46989 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72353 * 6 5 4 9 9 C 1.47423 * 125.65109 * 359.97383 * 8 6 5 10 10 C 1.55123 * 104.72654 * 155.81318 * 9 8 6 11 11 C 1.55156 * 101.48498 * 37.29727 * 10 9 8 12 12 O 1.42901 * 110.72261 * 82.69670 * 11 10 9 13 13 C 1.50709 * 110.87197 * 205.90029 * 11 10 9 14 14 H 1.07998 * 119.99690 * 355.05650 * 13 11 10 15 15 C 1.37873 * 119.99818 * 175.06059 * 13 11 10 16 16 N 1.31518 * 120.00226 * 359.97438 * 15 13 11 17 17 Si 1.86804 * 119.99710 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47014 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46929 * 120.00183 * 17 15 13 20 20 H 1.48493 * 109.47278 * 240.00415 * 17 15 13 21 21 C 1.47025 * 125.65000 * 180.27553 * 8 6 5 22 22 H 1.09007 * 109.46792 * 100.94324 * 3 2 1 23 23 H 1.08994 * 109.47251 * 340.94670 * 3 2 1 24 24 H 1.09004 * 109.47150 * 60.00218 * 5 4 3 25 25 H 1.08994 * 109.47490 * 299.99945 * 5 4 3 26 26 H 1.09004 * 110.36802 * 274.74548 * 9 8 6 27 27 H 1.09004 * 110.36924 * 37.06499 * 9 8 6 28 28 H 1.09005 * 111.19378 * 279.19151 * 10 9 8 29 29 H 1.08999 * 110.93906 * 155.28614 * 10 9 8 30 30 H 0.96697 * 113.99408 * 185.02602 * 12 11 10 31 31 H 0.96997 * 119.99596 * 179.97438 * 16 15 13 32 32 H 1.09004 * 109.88256 * 300.44464 * 21 8 6 33 33 H 1.08999 * 109.88203 * 61.60563 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2122 1.2927 1.1207 5 6 5.0146 1.1396 0.9861 6 6 5.6735 2.1640 1.8736 7 8 4.9940 2.9224 2.5325 8 7 7.0178 2.2333 1.9398 9 6 7.9600 1.3725 1.2019 10 6 9.2668 2.2036 1.1132 11 6 9.2829 2.9028 2.4982 12 8 9.8243 2.0351 3.4963 13 6 10.0584 4.1937 2.4391 14 1 10.5762 4.4714 1.5329 15 6 10.1068 5.0198 3.5418 16 7 9.4759 4.6817 4.6451 17 14 11.0686 6.6196 3.4687 18 1 11.6824 6.7671 2.1245 19 1 10.1521 7.7602 3.7218 20 1 12.1356 6.6033 4.5014 21 6 7.7876 3.1759 2.7648 22 1 2.9712 0.1959 -1.0091 23 1 2.9718 -0.9705 0.3355 24 1 5.3173 1.3066 -0.0477 25 1 5.3186 0.1400 1.2967 26 1 8.1338 0.4451 1.7476 27 1 7.5776 1.1601 0.2034 28 1 9.2146 2.9352 0.3068 29 1 10.1340 1.5543 0.9933 30 1 9.7860 2.3951 4.3930 31 1 9.5103 5.2628 5.4209 32 1 7.5421 4.2002 2.4843 33 1 7.5635 3.0143 3.8192 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346082626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:19 Heat of formation + Delta-G solvation = -74.532830 kcal Electronic energy + Delta-G solvation = -18088.299256 eV Core-core repulsion = 15046.712882 eV Total energy + Delta-G solvation = -3041.586373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96128 -38.92102 -37.73237 -36.05762 -34.21711 -32.26222 -31.22873 -30.65397 -29.29048 -26.76473 -24.18371 -21.45934 -20.58917 -19.15140 -19.03720 -18.00930 -17.42525 -17.09154 -16.85837 -16.37892 -15.91103 -15.79444 -15.25748 -15.06134 -14.68290 -14.67850 -13.99474 -13.87097 -13.53035 -13.47747 -13.20789 -13.06378 -12.91151 -12.85888 -12.47798 -12.30815 -12.23232 -12.01887 -11.16010 -11.04947 -10.91836 -10.64204 -10.24838 -9.56139 -8.73938 -8.26123 -6.41313 0.04066 1.33958 1.39939 1.43942 1.53699 1.61668 1.70348 2.06645 2.21212 2.38835 2.85732 3.01405 3.52528 3.85606 4.11863 4.17941 4.28612 4.31003 4.35109 4.47308 4.48922 4.71818 4.76366 5.07730 5.18763 5.28200 5.42702 5.54465 5.76712 6.08078 6.44525 6.63542 6.69696 7.15753 7.28837 7.36215 8.79646 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039423 B = 0.003848 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.076982 B = 7275.540625 C = 7605.678331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.247 3.753 3 C -0.001 4.001 4 S -0.227 6.227 5 C -0.096 4.096 6 C 0.523 3.477 7 O -0.588 6.588 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.114 4.114 11 C 0.230 3.770 12 O -0.587 6.587 13 C -0.555 4.555 14 H 0.067 0.933 15 C 0.024 3.976 16 N -0.916 5.916 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.279 1.279 21 C 0.123 3.877 22 H 0.170 0.830 23 H 0.168 0.832 24 H 0.156 0.844 25 H 0.152 0.848 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.374 0.626 31 H 0.268 0.732 32 H 0.030 0.970 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -11.822 -11.938 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C -0.151 4.151 4 S -0.002 6.002 5 C -0.247 4.247 6 C 0.312 3.688 7 O -0.469 6.469 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.152 4.152 11 C 0.190 3.810 12 O -0.394 6.394 13 C -0.593 4.593 14 H 0.085 0.915 15 C -0.177 4.177 16 N -0.556 5.556 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.001 4.001 22 H 0.187 0.813 23 H 0.186 0.814 24 H 0.174 0.826 25 H 0.170 0.830 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.223 0.777 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.456 -11.077 -11.351 17.124 hybrid contribution 1.403 1.025 0.654 1.856 sum -5.054 -10.052 -10.697 15.524 Atomic orbital electron populations 1.81289 1.14319 1.09799 1.10003 1.28446 0.94534 0.92085 0.92007 1.21060 0.83096 1.04433 1.06492 1.88526 1.04588 1.47181 1.59954 1.23469 0.93092 1.02940 1.05172 1.20260 0.80842 0.84875 0.82841 1.90728 1.63346 1.45576 1.47271 1.48776 1.04809 1.36025 1.44865 1.22658 0.88256 0.93161 0.97702 1.22798 0.97754 0.99157 0.95496 1.19764 0.86464 0.88179 0.86641 1.86091 1.85044 1.47804 1.20481 1.21904 1.32661 1.05297 0.99429 0.91457 1.25802 0.95506 1.01229 0.95122 1.69810 1.42997 1.39348 1.03413 0.85474 0.78320 0.79120 0.78541 1.18709 1.21260 1.20470 1.22466 0.94106 0.90793 0.92722 0.81298 0.81420 0.82609 0.82999 0.90151 0.86059 0.89722 0.89130 0.77700 0.92248 0.95197 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.82 18.54 20.01 0.37 -11.45 16 2 C 0.25 4.25 15.44 89.44 1.38 5.63 16 3 C 0.00 -0.01 6.42 70.18 0.45 0.44 16 4 S -0.23 -4.71 20.83 -56.49 -1.18 -5.89 16 5 C -0.10 -1.65 5.43 71.24 0.39 -1.27 16 6 C 0.52 17.42 7.87 87.66 0.69 18.11 16 7 O -0.59 -26.40 16.19 -3.04 -0.05 -26.45 16 8 N -0.61 -21.45 3.32 -811.34 -2.70 -24.14 16 9 C 0.10 2.61 6.69 86.93 0.58 3.20 16 10 C -0.11 -3.77 6.24 32.06 0.20 -3.57 16 11 C 0.23 10.41 0.85 -10.35 -0.01 10.40 16 12 O -0.59 -27.97 13.07 -148.98 -1.95 -29.92 16 13 C -0.55 -28.01 8.13 25.60 0.21 -27.80 16 14 H 0.07 3.31 7.78 -2.91 -0.02 3.28 16 15 C 0.02 1.24 5.28 84.65 0.45 1.69 16 16 N -0.92 -49.27 10.96 21.45 0.24 -49.03 16 17 Si 0.96 41.43 29.54 68.60 2.03 43.46 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 C 0.12 5.75 5.24 86.73 0.45 6.20 16 22 H 0.17 0.03 8.14 -2.39 -0.02 0.01 16 23 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.16 1.40 7.86 -2.39 -0.02 1.38 16 25 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.12 1.73 7.49 -2.38 -0.02 1.71 16 28 H 0.08 2.67 8.05 -2.38 -0.02 2.65 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.37 19.00 7.45 -74.06 -0.55 18.44 16 31 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 32 H 0.03 1.58 7.82 -2.38 -0.02 1.57 16 33 H 0.03 1.50 7.91 -2.39 -0.02 1.48 16 Total: -1.00 -75.85 304.72 2.14 -73.71 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.59 Total: 16.68 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 4.79 Total: 13.04 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.09 Total: -84.62 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -2.00 Total: -56.37 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.18 Total: -5.89 kcal Total: -75.85 2.14 -73.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.822 kcal (2) G-P(sol) polarization free energy of solvation -75.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds