Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81396 * 109.47349 * 333.03782 * 3 2 1 5 5 C 1.81405 * 103.00139 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47226 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99821 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64711 * 359.97438 * 8 6 5 10 10 C 1.54317 * 107.27020 * 178.98608 * 9 8 6 11 11 C 1.55155 * 102.94318 * 337.80321 * 10 9 8 12 12 O 1.42901 * 111.00611 * 277.39205 * 11 10 9 13 13 C 1.50702 * 111.00474 * 153.57580 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72219 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47419 * 125.64618 * 180.02562 * 8 6 5 22 22 H 1.09002 * 109.47419 * 213.03727 * 3 2 1 23 23 H 1.09006 * 109.47210 * 93.04253 * 3 2 1 24 24 H 1.08998 * 109.46739 * 60.00061 * 5 4 3 25 25 H 1.08997 * 109.46876 * 299.99991 * 5 4 3 26 26 H 1.08993 * 109.88504 * 59.56520 * 9 8 6 27 27 H 1.09000 * 109.88155 * 298.40015 * 9 8 6 28 28 H 1.09001 * 110.72200 * 219.44351 * 10 9 8 29 29 H 1.09002 * 110.72350 * 96.16683 * 10 9 8 30 30 H 0.96705 * 114.00067 * 176.82062 * 12 11 10 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 32 32 H 1.08997 * 110.36770 * 85.25016 * 21 8 6 33 33 H 1.09000 * 110.37080 * 322.91714 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2134 -1.5234 0.7754 5 6 5.0158 -1.3407 0.6820 6 6 5.6757 -2.5485 1.2958 7 8 4.9968 -3.4446 1.7509 8 7 7.0201 -2.6334 1.3379 9 6 7.9588 -1.6254 0.8240 10 6 9.3853 -2.1382 1.1132 11 6 9.1654 -3.1386 2.2785 12 8 9.0991 -2.4574 3.5329 13 6 10.2421 -4.1929 2.2958 14 1 11.0268 -4.1756 1.5540 15 6 10.2290 -5.1758 3.2627 16 7 9.2737 -5.1966 4.1663 17 14 11.5680 -6.4780 3.2888 18 1 12.5179 -6.2338 2.1738 19 1 12.2958 -6.4138 4.5817 20 1 10.9551 -7.8216 3.1321 21 6 7.7928 -3.7529 1.9061 22 1 2.9710 0.8623 0.5603 23 1 2.9714 0.0554 -1.0263 24 1 5.3188 -0.4454 1.2249 25 1 5.3184 -1.2527 -0.3614 26 1 7.7966 -0.6747 1.3317 27 1 7.8196 -1.5028 -0.2501 28 1 10.0336 -1.3193 1.4251 29 1 9.7967 -2.6464 0.2410 30 1 8.9141 -3.0359 4.2854 31 1 9.2643 -5.8884 4.8463 32 1 7.9190 -4.5418 1.1645 33 1 7.2979 -4.1428 2.7956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346082627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = -50.953792 kcal Electronic energy + Delta-G solvation = -18103.025423 eV Core-core repulsion = 15062.461514 eV Total energy + Delta-G solvation = -3040.563909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.49658 -37.29748 -36.90247 -34.38056 -32.21394 -31.04763 -30.46070 -29.47360 -27.75188 -25.00384 -22.70809 -19.79426 -19.32111 -18.12024 -17.32266 -16.71578 -16.38388 -15.82044 -15.35826 -15.18574 -14.85038 -14.28930 -14.20211 -13.88534 -13.19205 -13.07585 -12.99497 -12.61970 -12.25568 -12.23078 -12.03667 -11.68849 -11.51641 -11.11421 -10.89646 -10.70198 -10.51043 -10.25920 -10.21233 -9.62556 -9.47686 -8.74910 -8.46627 -7.97122 -7.85206 -6.35116 -4.44416 0.82545 2.10864 2.42279 2.81681 2.92654 3.15997 3.25457 3.28107 3.47789 3.50418 4.21389 4.62258 4.68097 4.82017 4.89475 4.93079 5.11435 5.28731 5.53770 5.70867 5.92615 6.05065 6.39142 6.61756 6.74231 6.82228 7.15122 7.16266 7.24890 7.68316 7.92409 8.03674 8.50541 8.59706 9.25278 9.38033 10.72484 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.003788 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.182065 B = 7390.225235 C = 7697.294717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.225 3.775 3 C -0.028 4.028 4 S -0.136 6.136 5 C -0.124 4.124 6 C 0.536 3.464 7 O -0.531 6.531 8 N -0.604 5.604 9 C 0.102 3.898 10 C -0.118 4.118 11 C 0.249 3.751 12 O -0.584 6.584 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.094 3.906 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.386 0.614 31 H 0.271 0.729 32 H 0.063 0.937 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.007 10.282 -8.421 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.094 4.094 3 C -0.179 4.179 4 S 0.088 5.912 5 C -0.276 4.276 6 C 0.321 3.679 7 O -0.409 6.409 8 N -0.337 5.337 9 C -0.021 4.021 10 C -0.156 4.156 11 C 0.208 3.792 12 O -0.394 6.394 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.028 4.028 22 H 0.145 0.855 23 H 0.145 0.855 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.239 0.761 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.663 9.402 -7.981 14.018 hybrid contribution 1.821 -0.152 -0.141 1.833 sum -4.842 9.250 -8.122 13.228 Atomic orbital electron populations 1.81262 1.12150 1.07577 1.08059 1.27781 0.93774 0.94001 0.93801 1.20828 0.86060 1.03718 1.07274 1.88086 1.02424 1.22167 1.78531 1.23617 0.95241 1.02696 1.06039 1.19050 0.81593 0.86863 0.80383 1.90746 1.62177 1.40228 1.47748 1.48664 1.03810 1.22788 1.58435 1.22064 0.91022 0.91814 0.97232 1.22632 0.93533 1.00082 0.99384 1.19608 0.89864 0.88079 0.81621 1.86063 1.94689 1.40453 1.18225 1.21521 1.10897 1.10703 1.14503 0.91385 1.25087 0.95787 0.97562 0.94802 1.69569 1.32246 1.35098 1.16399 0.86327 0.81374 0.80884 0.78189 1.19566 1.20717 1.20729 1.23378 0.93491 0.87567 0.98346 0.85496 0.85544 0.86840 0.86980 0.91998 0.92494 0.90542 0.90339 0.76142 0.91859 0.91887 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.35 18.54 42.15 0.78 -4.57 16 2 C 0.23 2.25 15.44 -20.76 -0.32 1.93 16 3 C -0.03 -0.19 6.42 34.37 0.22 0.04 16 4 S -0.14 -1.62 20.83 -107.50 -2.24 -3.86 16 5 C -0.12 -1.40 5.62 36.00 0.20 -1.20 16 6 C 0.54 9.45 7.87 -10.99 -0.09 9.36 16 7 O -0.53 -11.69 16.12 5.55 0.09 -11.60 16 8 N -0.60 -11.09 3.33 -170.53 -0.57 -11.66 16 9 C 0.10 1.52 6.49 -3.07 -0.02 1.50 16 10 C -0.12 -2.11 6.13 -24.90 -0.15 -2.26 16 11 C 0.25 5.65 0.88 -89.62 -0.08 5.57 16 12 O -0.58 -14.21 13.16 -35.23 -0.46 -14.68 16 13 C -0.54 -13.33 8.25 -34.44 -0.28 -13.62 16 14 H 0.07 1.65 7.76 -52.49 -0.41 1.24 16 15 C 0.07 1.78 5.31 -17.82 -0.09 1.69 16 16 N -0.89 -23.13 10.74 55.43 0.60 -22.53 16 17 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 C 0.09 2.10 5.63 -2.53 -0.01 2.08 16 22 H 0.13 0.49 8.14 -51.92 -0.42 0.06 16 23 H 0.13 0.46 8.14 -51.92 -0.42 0.03 16 24 H 0.11 1.01 8.14 -51.92 -0.42 0.59 16 25 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.08 1.31 8.01 -51.93 -0.42 0.90 16 30 H 0.39 9.86 7.00 45.56 0.32 10.18 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 33 H 0.08 2.15 7.65 -51.93 -0.40 1.76 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -30.97 305.36 -6.26 -37.24 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.41 Total: 7.26 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.63 Total: 5.09 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.81 Total: -38.76 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.37 Total: -26.28 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.24 Total: -3.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.97 -6.26 -37.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.718 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds