Wall clock time and date at job start Mon Mar 30 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 S 1.81396 * 109.47349 * 333.03782 * 3 2 1 5 5 C 1.81405 * 103.00139 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47226 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99821 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64711 * 359.97438 * 8 6 5 10 10 C 1.54317 * 107.27020 * 178.98608 * 9 8 6 11 11 C 1.55155 * 102.94318 * 337.80321 * 10 9 8 12 12 O 1.42901 * 111.00611 * 277.39205 * 11 10 9 13 13 C 1.50702 * 111.00474 * 153.57580 * 11 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72219 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48496 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46983 * 120.00379 * 17 15 13 20 20 H 1.48503 * 109.47491 * 240.00192 * 17 15 13 21 21 C 1.47419 * 125.64618 * 180.02562 * 8 6 5 22 22 H 1.09002 * 109.47419 * 213.03727 * 3 2 1 23 23 H 1.09006 * 109.47210 * 93.04253 * 3 2 1 24 24 H 1.08998 * 109.46739 * 60.00061 * 5 4 3 25 25 H 1.08997 * 109.46876 * 299.99991 * 5 4 3 26 26 H 1.08993 * 109.88504 * 59.56520 * 9 8 6 27 27 H 1.09000 * 109.88155 * 298.40015 * 9 8 6 28 28 H 1.09001 * 110.72200 * 219.44351 * 10 9 8 29 29 H 1.09002 * 110.72350 * 96.16683 * 10 9 8 30 30 H 0.96705 * 114.00067 * 176.82062 * 12 11 10 31 31 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 32 32 H 1.08997 * 110.36770 * 85.25016 * 21 8 6 33 33 H 1.09000 * 110.37080 * 322.91714 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2134 -1.5234 0.7754 5 6 5.0158 -1.3407 0.6820 6 6 5.6757 -2.5485 1.2958 7 8 4.9968 -3.4446 1.7509 8 7 7.0201 -2.6334 1.3379 9 6 7.9588 -1.6254 0.8240 10 6 9.3853 -2.1382 1.1132 11 6 9.1654 -3.1386 2.2785 12 8 9.0991 -2.4574 3.5329 13 6 10.2421 -4.1929 2.2958 14 1 11.0268 -4.1756 1.5540 15 6 10.2290 -5.1758 3.2627 16 7 9.2737 -5.1966 4.1663 17 14 11.5680 -6.4780 3.2888 18 1 12.5179 -6.2338 2.1738 19 1 12.2958 -6.4138 4.5817 20 1 10.9551 -7.8216 3.1321 21 6 7.7928 -3.7529 1.9061 22 1 2.9710 0.8623 0.5603 23 1 2.9714 0.0554 -1.0263 24 1 5.3188 -0.4454 1.2249 25 1 5.3184 -1.2527 -0.3614 26 1 7.7966 -0.6747 1.3317 27 1 7.8196 -1.5028 -0.2501 28 1 10.0336 -1.3193 1.4251 29 1 9.7967 -2.6464 0.2410 30 1 8.9141 -3.0359 4.2854 31 1 9.2643 -5.8884 4.8463 32 1 7.9190 -4.5418 1.1645 33 1 7.2979 -4.1428 2.7956 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346082627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:22 Heat of formation + Delta-G solvation = -74.134984 kcal Electronic energy + Delta-G solvation = -18104.030635 eV Core-core repulsion = 15062.461514 eV Total energy + Delta-G solvation = -3041.569121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93916 -38.87533 -37.73583 -36.04634 -34.13748 -32.32057 -31.24046 -30.64121 -29.32120 -26.76462 -24.12750 -21.44365 -20.56613 -19.21241 -19.00944 -18.01643 -17.26738 -17.03527 -16.96275 -16.40555 -15.93207 -15.78420 -15.26682 -15.13640 -14.70947 -14.59919 -13.90441 -13.81870 -13.55561 -13.44499 -13.22637 -13.05123 -12.91565 -12.85501 -12.47247 -12.28048 -12.17347 -12.02869 -11.25193 -11.01969 -10.92642 -10.63556 -10.27583 -9.45065 -8.74198 -8.25186 -6.41042 0.04031 1.33802 1.41283 1.45277 1.55317 1.63168 1.69882 2.07326 2.22155 2.39835 2.85202 3.01864 3.54773 3.85911 4.13213 4.20052 4.27813 4.30956 4.36223 4.46343 4.46616 4.75758 4.79224 5.07099 5.15612 5.33751 5.45974 5.49417 5.79007 6.07471 6.44006 6.63580 6.71263 7.17115 7.31885 7.40441 8.80395 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.003788 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.182065 B = 7390.225235 C = 7697.294717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.247 3.753 3 C -0.002 4.002 4 S -0.226 6.226 5 C -0.096 4.096 6 C 0.523 3.477 7 O -0.589 6.589 8 N -0.609 5.609 9 C 0.103 3.897 10 C -0.115 4.115 11 C 0.229 3.771 12 O -0.589 6.589 13 C -0.553 4.553 14 H 0.070 0.930 15 C 0.023 3.977 16 N -0.919 5.919 17 Si 0.963 3.037 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.285 1.285 21 C 0.106 3.894 22 H 0.167 0.833 23 H 0.170 0.830 24 H 0.148 0.852 25 H 0.156 0.844 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.376 0.624 31 H 0.269 0.731 32 H 0.045 0.955 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 12.875 -10.663 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.071 4.071 3 C -0.151 4.151 4 S -0.002 6.002 5 C -0.246 4.246 6 C 0.312 3.688 7 O -0.470 6.470 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.153 4.153 11 C 0.189 3.811 12 O -0.398 6.398 13 C -0.591 4.591 14 H 0.089 0.911 15 C -0.177 4.177 16 N -0.559 5.559 17 Si 0.789 3.211 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.211 1.211 21 C -0.017 4.017 22 H 0.184 0.816 23 H 0.187 0.813 24 H 0.166 0.834 25 H 0.174 0.826 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.615 12.039 -10.256 16.783 hybrid contribution 1.501 -0.956 0.554 1.863 sum -4.115 11.084 -9.702 15.294 Atomic orbital electron populations 1.81286 1.14285 1.09468 1.10311 1.28432 0.94515 0.92220 0.91893 1.21055 0.83130 1.01248 1.09677 1.88505 1.04558 1.26974 1.80122 1.23456 0.93108 0.99801 1.08281 1.20202 0.80941 0.88230 0.79439 1.90725 1.63344 1.42900 1.50017 1.48710 1.04722 1.22316 1.58409 1.22308 0.87917 0.91195 1.00363 1.22643 0.96163 0.99138 0.97314 1.19891 0.89308 0.89535 0.82377 1.86049 1.94693 1.40432 1.18634 1.21910 1.11506 1.11357 1.14335 0.91148 1.25831 0.97575 0.99494 0.94789 1.69690 1.33634 1.35624 1.16951 0.85428 0.79148 0.78352 0.78221 1.18571 1.20736 1.21106 1.22826 0.93965 0.88793 0.96142 0.81556 0.81261 0.83423 0.82602 0.89519 0.87580 0.89609 0.89323 0.77389 0.92160 0.93678 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.94 18.54 20.01 0.37 -11.57 16 2 C 0.25 4.35 15.44 89.44 1.38 5.73 16 3 C 0.00 -0.01 6.42 70.18 0.45 0.44 16 4 S -0.23 -4.83 20.83 -56.49 -1.18 -6.00 16 5 C -0.10 -1.73 5.62 71.24 0.40 -1.33 16 6 C 0.52 17.68 7.87 87.66 0.69 18.37 16 7 O -0.59 -26.60 16.12 -3.04 -0.05 -26.65 16 8 N -0.61 -21.38 3.33 -811.82 -2.70 -24.08 16 9 C 0.10 2.62 6.49 86.73 0.56 3.18 16 10 C -0.11 -3.78 6.13 31.78 0.19 -3.58 16 11 C 0.23 10.40 0.88 -10.15 -0.01 10.39 16 12 O -0.59 -29.01 13.16 -148.98 -1.96 -30.97 16 13 C -0.55 -27.59 8.25 25.60 0.21 -27.38 16 14 H 0.07 3.38 7.76 -2.91 -0.02 3.36 16 15 C 0.02 1.20 5.31 84.66 0.45 1.65 16 16 N -0.92 -49.41 10.74 21.45 0.23 -49.18 16 17 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.11 4.89 5.63 86.86 0.49 5.38 16 22 H 0.17 0.22 8.14 -2.39 -0.02 0.20 16 23 H 0.17 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.09 2.70 8.01 -2.39 -0.02 2.68 16 30 H 0.38 19.96 7.00 -74.05 -0.52 19.45 16 31 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 32 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 33 H 0.04 1.99 7.65 -2.39 -0.02 1.98 16 Total: -1.00 -75.04 305.36 2.18 -72.86 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.62 Total: 19.76 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 4.82 Total: 12.85 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.10 Total: -84.84 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -2.01 Total: -57.61 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.18 Total: -6.00 kcal Total: -75.04 2.18 -72.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346082627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.275 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds